View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_high_69 (Length: 276)
Name: NF13771_high_69
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_69 |
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Alignment Details
Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 27251218 - 27251101
Alignment:
| Q |
70 |
acctcttgtagttccaatatagaatctaaagtttccttggaataagttataaaatctgaatatgcatctctaactttatcatctgattcactgaatgaag |
169 |
Q |
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|||||||| ||||||||||||||||| ||||| ||||||||| ||||||| |||||| ||||||| ||| |||| | ||||||||||||| |||||| |
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| T |
27251218 |
acctcttgcagttccaatatagaatccaaagtctccttggaagaagttatcaaatcttcatatgcacctcgaactgtctcatctgattcacagaatgatt |
27251119 |
T |
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| Q |
170 |
cttttattgattcctgca |
187 |
Q |
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| T |
27251118 |
cttttattgattcctgca |
27251101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 70 - 194
Target Start/End: Complemental strand, 1743167 - 1743043
Alignment:
| Q |
70 |
acctcttgtagttccaatatagaatctaaagtttccttggaataagttataaaatctgaatatgcatctctaactttatcatctgattcactgaatgaag |
169 |
Q |
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|||||||| ||||||||||||||||| ||||| ||||||||| ||||||| |||||| |||||| |||||||| | || |||||||||| ||||| |
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| T |
1743167 |
acctcttgaagttccaatatagaatccaaagtctccttggaagaagttatcaaatcttcatatgcgcctctaactgtctcgtctgattcacaaaatgatt |
1743068 |
T |
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| Q |
170 |
cttttattgattcctgcagacaatt |
194 |
Q |
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|||||||||||||||||||| |||| |
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| T |
1743067 |
cttttattgattcctgcagaaaatt |
1743043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 6517378 - 6517425
Alignment:
| Q |
9 |
agcagcacagacacatgtttaggatagaaatgcagctaatgtacaaca |
56 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6517378 |
agcaacacaaacacatgtttaggatagaaatgcagctaatgtacaaca |
6517425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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