View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_high_7 (Length: 623)
Name: NF13771_high_7
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 1 - 608
Target Start/End: Original strand, 42223156 - 42223763
Alignment:
| Q |
1 |
aaggggctttttggaatgtaaattttttcccacccacctcaacatcaaagtcgtgaataacgtattctataacataatgtgctcctgaagactgttactt |
100 |
Q |
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| T |
42223156 |
aaggggctttttggaatgtaaattttttcccacccatctcaacatcaaagtcgtgaataacgtattctataacataatgtgctcctgaagactgttactt |
42223255 |
T |
|
| Q |
101 |
ggtaaataacaattaatatggtgaaatgaaattgactaagaagatatttataaattaaaattctggtgggtggatgcgatctgattacatttcagcccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42223256 |
ggtaaataacaattaatatggtgaaatgaaattgactaagaagatatttataaattaaaattctggtgggtggatgtgatctgattacatttcagcccaa |
42223355 |
T |
|
| Q |
201 |
aagatgcaagtgcaactctgtaagagaagtgtgctgcttaataaacttcaggcattgctttaggcaatgataaaattgcatctttaaaaacaaaacatcc |
300 |
Q |
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| T |
42223356 |
aagatgcaagtgcaactctgtaagagaagtgtgctgcttaataaacttcaggcattgctttaggcaatgataaaattgcatctttaaaaacaaaacatcc |
42223455 |
T |
|
| Q |
301 |
caacaaggttggatggaaaacgaaagatgataaggataaattagcatttcccataattttatagtagcaatgatgaaatgggaggttagacgagtctgtc |
400 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42223456 |
caacaagattggatggaaaacgaaaaatgataaggataaattagcatttcccataattttatagtagcaatgatgaaatgggaggttagacgagtctgtc |
42223555 |
T |
|
| Q |
401 |
ggccttccacattaatccatcatgatcaataattttacttggaccgttggttaccattagcaaccacaacctgcgacaggtccacctctattttgttggc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42223556 |
ggccttccacattaatccatcatgatcaataattttacttggactgtttgttaccattagcaaccacaacctgcgacaggtccacctctattttgttggc |
42223655 |
T |
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| Q |
501 |
ttttctggcagctatttgcatcttcgtggatttgtaataggttgcatatagaatcagctgcgccacagaaaacaatgttccaattccatttggtatctga |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42223656 |
ttttctggcagctatttgcatcttcgtggatttgtaataggttgcatatagaatcagctgcgccacagaaaacaatgttccaattccatttggtatctga |
42223755 |
T |
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| Q |
601 |
gaattaac |
608 |
Q |
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|| ||||| |
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| T |
42223756 |
gagttaac |
42223763 |
T |
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