View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13771_high_72 (Length: 269)

Name: NF13771_high_72
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13771_high_72
NF13771_high_72
[»] chr7 (5 HSPs)
chr7 (98-226)||(45660612-45660739)
chr7 (226-269)||(45088269-45088312)
chr7 (228-269)||(21709158-21709199)
chr7 (225-269)||(26025883-26025927)
chr7 (228-264)||(45596869-45596905)
[»] scaffold0029 (2 HSPs)
scaffold0029 (227-269)||(71846-71888)
scaffold0029 (228-269)||(70669-70710)
[»] chr8 (9 HSPs)
chr8 (227-269)||(14816569-14816611)
chr8 (227-269)||(14829129-14829171)
chr8 (228-269)||(9311021-9311062)
chr8 (228-265)||(14819391-14819428)
chr8 (231-269)||(9312193-9312231)
chr8 (228-269)||(39270811-39270852)
chr8 (228-269)||(39567063-39567104)
chr8 (221-269)||(44633791-44633839)
chr8 (229-269)||(45378565-45378605)
[»] chr4 (14 HSPs)
chr4 (224-269)||(11038573-11038618)
chr4 (226-269)||(702667-702710)
chr4 (226-269)||(770966-771009)
chr4 (226-269)||(35060470-35060513)
chr4 (228-269)||(756487-756528)
chr4 (228-269)||(36220617-36220658)
chr4 (228-269)||(51645988-51646029)
chr4 (226-269)||(11039747-11039790)
chr4 (230-269)||(16039695-16039734)
chr4 (227-269)||(701632-701674)
chr4 (227-269)||(769931-769973)
chr4 (229-263)||(36219408-36219442)
chr4 (228-269)||(16038275-16038316)
chr4 (228-269)||(35055333-35055374)
[»] chr2 (4 HSPs)
chr2 (228-269)||(36889764-36889805)
chr2 (228-269)||(7184881-7184922)
chr2 (228-269)||(36888338-36888379)
chr2 (229-269)||(13809426-13809466)
[»] chr6 (6 HSPs)
chr6 (226-269)||(29744779-29744822)
chr6 (228-269)||(21611915-21611956)
chr6 (228-269)||(29751157-29751198)
chr6 (226-269)||(5660208-5660251)
chr6 (228-269)||(14403688-14403729)
chr6 (222-267)||(21283922-21283967)
[»] chr3 (5 HSPs)
chr3 (218-269)||(27695592-27695643)
chr3 (228-269)||(20184448-20184489)
chr3 (228-269)||(27688486-27688527)
chr3 (228-269)||(39992511-39992552)
chr3 (229-269)||(21815909-21815949)
[»] chr1 (8 HSPs)
chr1 (226-269)||(51599450-51599493)
chr1 (231-269)||(33333429-33333467)
chr1 (228-269)||(16962010-16962051)
chr1 (227-269)||(46015874-46015916)
chr1 (227-269)||(51597960-51598002)
chr1 (224-269)||(16963443-16963488)
chr1 (228-269)||(46014701-46014742)
chr1 (227-263)||(2938566-2938601)
[»] chr5 (1 HSPs)
chr5 (228-269)||(19718907-19718948)
[»] scaffold0394 (1 HSPs)
scaffold0394 (228-264)||(14270-14306)
[»] scaffold0031 (2 HSPs)
scaffold0031 (228-269)||(123424-123465)
scaffold0031 (228-269)||(134300-134341)


Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 45660739 - 45660612
Alignment:
Q  98 caagctgcataagtgaattggtgtgtaaaatcatttcaactnnnnnnnncatctatagagaaacacttcaaaatcaatttgagatatgtaaaatgatttc 197  Q
    ||||||||||||||||||||||||| |||||||||||||||        ||| |||| |||||||||| |||||||||||||||||||||||||||||||    
T  45660739 caagctgcataagtgaattggtgtggaaaatcatttcaactaaaaaaa-catgtatatagaaacacttgaaaatcaatttgagatatgtaaaatgatttc 45660641  T
Q  198 ctgaaaaatgaaagtgacagatattttat 226  Q
    ||||||||||||||||| |||||||||||    
T  45660640 ctgaaaaatgaaagtgaaagatattttat 45660612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 45088312 - 45088269
Alignment:
Q  226 ttggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||||| |||||||||||||||| ||||||||    
T  45088312 ttggcttaattgctattttagtcccttaactaattgtttggtat 45088269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 21709158 - 21709199
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||||||||  ||||||||||||||||||| ||||    
T  21709158 ggcttaattgctattttcgtcccttaactaattttttagtat 21709199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 26025927 - 26025883
Alignment:
Q  225 attggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||||||  |||| ||||||||||| |||||||    
T  26025927 attggcttaattgctatttttgtcctttaactaatttcttggtat 26025883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 45596869 - 45596905
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaatttttt 264  Q
    |||||||||||||||| | ||||||||||||||||||    
T  45596869 ggcttaattgctattttaatcccttaactaatttttt 45596905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 71888 - 71846
Alignment:
Q  227 tggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  71888 tggcttaattgctattttagtcccttaactaattttttggtat 71846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 70669 - 70710
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  70669 ggcttaattgctattttagtcccttaactaattttttggtat 70710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 14816569 - 14816611
Alignment:
Q  227 tggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  14816569 tggcttaattgctattttagtcccttaactaattttttggtat 14816611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 14829171 - 14829129
Alignment:
Q  227 tggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  14829171 tggcttaattgctattttagtcccttaactaattttttggtat 14829129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 9311021 - 9311062
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  9311021 ggcttaattgctattttagtcccttatctaattttttggtat 9311062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 14819428 - 14819391
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttg 265  Q
    |||||||||||||||| |||||||||||||||||||||    
T  14819428 ggcttaattgctattttagtcccttaactaattttttg 14819391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 9312231 - 9312193
Alignment:
Q  231 ttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  9312231 ttaattgctattttagtcctttaactaattttttggtat 9312193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 39270852 - 39270811
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||||||||  ||||||||||| ||||||||||||    
T  39270852 ggcttaattgctattttcgtcccttaacttattttttggtat 39270811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 39567063 - 39567104
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||| |||||  ||||||||||||||||||||||||    
T  39567063 ggcttaattgttattttcgtcccttaactaattttttggtat 39567104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 44633839 - 44633791
Alignment:
Q  221 ttttattggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||| ||| ||||||||||||||  || |||||||||||||||||||||    
T  44633839 tttttttgtcttaattgctattttggttccttaactaattttttggtat 44633791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 45378605 - 45378565
Alignment:
Q  229 gcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||  ||||||||| ||||||||||||||    
T  45378605 gcttaattgctattttcgtcccttaaataattttttggtat 45378565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 11038573 - 11038618
Alignment:
Q  224 tattggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||    
T  11038573 tattggcttaattgctattttagtcccttagctaattttttggtat 11038618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 702710 - 702667
Alignment:
Q  226 ttggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  702710 ttggcttaattgctattttcgtcccttaactaattttttggtat 702667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 771009 - 770966
Alignment:
Q  226 ttggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  771009 ttggcttaattgctattttcgtcccttaactaattttttggtat 770966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 35060513 - 35060470
Alignment:
Q  226 ttggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  35060513 ttggcttaattgctattttcgtcccttaactaattttttggtat 35060470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 756487 - 756528
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  756487 ggcttaattgctattttcgtcccttaactaattttttggtat 756528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 36220658 - 36220617
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||| ||| |||||||||||||||||||||    
T  36220658 ggcttaattgctattttagtaccttaactaattttttggtat 36220617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 51646029 - 51645988
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  51646029 ggcttaattgctattttagtcccttagctaattttttggtat 51645988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 11039790 - 11039747
Alignment:
Q  226 ttggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||||| ||||  |||||||||||||||||||    
T  11039790 ttggcttaattgctattttagtcatttaactaattttttggtat 11039747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 16039734 - 16039695
Alignment:
Q  230 cttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  16039734 cttaattgctatttttgtcccttaactaattttttggtat 16039695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 701632 - 701674
Alignment:
Q  227 tggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||||  ||||||||||| ||||||||||||    
T  701632 tggcttaattgctattttcgtcccttaacttattttttggtat 701674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 769931 - 769973
Alignment:
Q  227 tggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||||  ||||||||||| ||||||||||||    
T  769931 tggcttaattgctattttcgtcccttaacttattttttggtat 769973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 36219408 - 36219442
Alignment:
Q  229 gcttaattgctatttcagtcccttaactaattttt 263  Q
    ||||||||||||||| |||||||||||||||||||    
T  36219408 gcttaattgctattttagtcccttaactaattttt 36219442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 16038275 - 16038316
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||| |||||  ||||||||||||||||||||||||    
T  16038275 ggcttaattgttattttcgtcccttaactaattttttggtat 16038316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 35055333 - 35055374
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||| |||||  ||||||||||||||||||||||||    
T  35055333 ggcttaattgttattttcgtcccttaactaattttttggtat 35055374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 36889805 - 36889764
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  36889805 ggcttaattgctattttagtcccttaactaattttttggtat 36889764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 7184881 - 7184922
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||| |||| ||||||||||||||||||||    
T  7184881 ggcttaattgctattttagtctcttaactaattttttggtat 7184922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 36888338 - 36888379
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  36888338 ggcttaattgctattttagtcccttagctaattttttggtat 36888379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 13809426 - 13809466
Alignment:
Q  229 gcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||| |||||| || ||||||||||||||||||||||    
T  13809426 gcttaatttctattttaggcccttaactaattttttggtat 13809466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 29744779 - 29744822
Alignment:
Q  226 ttggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||||| |||||||||||||||| ||||||||    
T  29744779 ttggcttaattgctattttagtcccttaactaattatttggtat 29744822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 21611915 - 21611956
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  21611915 ggcttaattgctattttcgtcccttaactaattttttggtat 21611956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 29751198 - 29751157
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||| |||||||||||||||| ||||||||    
T  29751198 ggcttaattgctattttagtcccttaactaattatttggtat 29751157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 5660251 - 5660208
Alignment:
Q  226 ttggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||||||||||  |||||| |||||||||||||||||    
T  5660251 ttggcttaattgctattttcgtccctaaactaattttttggtat 5660208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 14403688 - 14403729
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||| ||||||||| ||||||| |||||||    
T  14403688 ggcttaattgctattttagtcccttacctaatttgttggtat 14403729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 21283967 - 21283922
Alignment:
Q  222 tttattggcttaattgctatttcagtcccttaactaattttttggt 267  Q
    ||||| |||||||||| |||||  ||||||||||||||||||||||    
T  21283967 tttataggcttaattgttattttcgtcccttaactaattttttggt 21283922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 27695643 - 27695592
Alignment:
Q  218 atattttattggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||| | |||||||||||||||| |||||||||||||||| ||||||||    
T  27695643 atattttctaggcttaattgctattttagtcccttaactaattatttggtat 27695592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 20184448 - 20184489
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||| ||||| |||||||||||||||||||||||||    
T  20184448 ggcttaattgttattttagtcccttaactaattttttggtat 20184489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 27688486 - 27688527
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||| |||||||||||||||| ||||||||    
T  27688486 ggcttaattgctattttagtcccttaactaattatttggtat 27688527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 39992552 - 39992511
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  39992552 ggcttaattactattttagtcccttaactaattttttggtat 39992511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 21815909 - 21815949
Alignment:
Q  229 gcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||  ||||||||||||||||||| ||||    
T  21815909 gcttaattgctattttcgtcccttaactaattttttagtat 21815949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 51599493 - 51599450
Alignment:
Q  226 ttggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  51599493 ttggcttaattgctattttcgtcccttaactaattttttggtat 51599450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 33333467 - 33333429
Alignment:
Q  231 ttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  33333467 ttaattgctattttagtcccttaactaattttttggtat 33333429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 16962010 - 16962051
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  16962010 ggcttaattgctatttttgtcccttaactaattttttggtat 16962051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 46015916 - 46015874
Alignment:
Q  227 tggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||    
T  46015916 tggcttaattgttattttagtcccttaagtaattttttggtat 46015874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 51597960 - 51598002
Alignment:
Q  227 tggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||||  ||||||||||| ||||||||||||    
T  51597960 tggcttaattgctattttcgtcccttaacttattttttggtat 51598002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 16963488 - 16963443
Alignment:
Q  224 tattggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||| |||||  || |||||||||||||||||||||    
T  16963488 tattggcttaattgttattttcgttccttaactaattttttggtat 16963443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 46014701 - 46014742
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||| ||||  |||||||||||||||||||    
T  46014701 ggcttaattgctattttagtcatttaactaattttttggtat 46014742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 2938566 - 2938601
Alignment:
Q  227 tggcttaattgctatttcagtcccttaactaattttt 263  Q
    ||||||||||||||||| |||||||||||||||||||    
T  2938566 tggcttaattgctattt-agtcccttaactaattttt 2938601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 19718948 - 19718907
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    |||||||||||||||| ||||| |||||||||||||||||||    
T  19718948 ggcttaattgctattttagtcctttaactaattttttggtat 19718907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 14270 - 14306
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaatttttt 264  Q
    |||||||||||||||| ||||||||||||||||||||    
T  14270 ggcttaattgctattttagtcccttaactaatttttt 14306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 123424 - 123465
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||||||||  |||||||||||||||| |||||||    
T  123424 ggcttaattgctattttcgtcccttaactaatttcttggtat 123465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 134300 - 134341
Alignment:
Q  228 ggcttaattgctatttcagtcccttaactaattttttggtat 269  Q
    ||||||||||||||||  |||||||||||||||| |||||||    
T  134300 ggcttaattgctattttcgtcccttaactaatttcttggtat 134341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University