View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13771_high_79 (Length: 252)
Name: NF13771_high_79
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_79 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 48625182 - 48625405
Alignment:
| Q |
1 |
tccattacccattcatcttcatcactgtccctcatctataaaagaatgttgtcttgctgcctcaccatcgccgccgttcacacccacatcgccatctctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48625182 |
tccattacccattcatcttcatcactgtccctcatatgcaaaagaatgttgtcttgctgcctcaccatcgccgccgttcacacccacgtcgccatctctg |
48625281 |
T |
|
| Q |
101 |
taaaacttgcacctcgtcgtttctcttcatgaccgttgtccctctcactctcgcatcattttatccatggctgtctttctcgctatcacgtctctctttc |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| || |||||||||| |||||||||||||||||| |
|
|
| T |
48625282 |
tgaaacttgcacctcgtcgtttctcttcatgagcgttgtccctctcactctcacatcattttatccacggttgtctttctcactatcacgtctctctttc |
48625381 |
T |
|
| Q |
201 |
cgccgtgagtcgagatctggagat |
224 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
48625382 |
caccgtgagtcgagatctggagat |
48625405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 23175180 - 23175001
Alignment:
| Q |
1 |
tccattacccattcatcttcatcactgtccctcatctataaaagaatgttgtcttgctgcctcaccatcgccgccgttcacacccacatcgccatctctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
23175180 |
tccattacccattcatcttcatcactgtccctcatctgcaaaagaatgttgtcttgctgcctcaccatcgccgtcgttcacacccacgtcgccatctctg |
23175081 |
T |
|
| Q |
101 |
taaaacttgcacctcgtcgtttctcttcatgaccgttgtccctctcactctcgcatcattttatccatggctgtctttct |
180 |
Q |
| |
|
| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23175080 |
tgaaacttgcacctggctgtttctcttcatgaccgttgtccctctcactctcgcatcattttatccatggttgtctttct |
23175001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 23586437 - 23586258
Alignment:
| Q |
1 |
tccattacccattcatcttcatcactgtccctcatctataaaagaatgttgtcttgctgcctcaccatcgccgccgttcacacccacatcgccatctctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
23586437 |
tccattacccattcatcttcatcactgtccctcatctgcaaaagaatgttgtcttgctgcctcaccatcgccgtcgttcacacccacgtcgccatctctg |
23586338 |
T |
|
| Q |
101 |
taaaacttgcacctcgtcgtttctcttcatgaccgttgtccctctcactctcgcatcattttatccatggctgtctttct |
180 |
Q |
| |
|
| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23586337 |
tgaaacttgcacctggctgtttctcttcatgaccgttgtccctctcactctcgcatcattttatccatggttgtctttct |
23586258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 6759672 - 6759528
Alignment:
| Q |
1 |
tccattacccattcatcttcatcactgtccctcatctataaaagaatgttgtcttgctgcctcaccatcgccgccgttcacacccacatcgccatctctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
6759672 |
tccattacccattcatcttcatcactgtccctcatctgcaaaagaatgttgtcttgttgcctcaccatcgccaccgttcacacccacgtcgccatctctg |
6759573 |
T |
|
| Q |
101 |
taaaacttgcacctcgtcgtttctcttcatgaccgttgtccctct |
145 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
6759572 |
tgaaacttgcacctcgccgtttctcttcatgaccgttgtctctct |
6759528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 34347934 - 34348079
Alignment:
| Q |
1 |
tccattacccattcatcttcatcactgtccc-tcatctataaaagaatgttgtcttgctgcctcaccatcgccgccgttcacacccacatcgccatctct |
99 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||| |||||| ||||| ||||||||||| |
|
|
| T |
34347934 |
tccattactcattcatcttcatcactgtcccctcatctgcaaaagaatgttgtcttgctgcctcactatcgccgttgttcactcccacgtcgccatctct |
34348033 |
T |
|
| Q |
100 |
gtaaaacttgcacctcgtcgtttctcttcatgaccgttgtccctct |
145 |
Q |
| |
|
|| ||||||| |||||| ||||||||||||||||||||||| |||| |
|
|
| T |
34348034 |
gtgaaacttgtacctcgccgtttctcttcatgaccgttgtctctct |
34348079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 34348072 - 34348106
Alignment:
| Q |
190 |
gtctctctttccgccgtgagtcgagatctggagat |
224 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
34348072 |
gtctctctttccaccgtgagtcgagatctggagat |
34348106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University