View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13771_high_84 (Length: 244)

Name: NF13771_high_84
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13771_high_84
NF13771_high_84
[»] chr1 (2 HSPs)
chr1 (19-229)||(52174335-52174545)
chr1 (41-96)||(9069628-9069683)
[»] chr7 (13 HSPs)
chr7 (23-225)||(31595055-31595257)
chr7 (19-229)||(31608254-31608464)
chr7 (20-225)||(31614536-31614741)
chr7 (23-225)||(31575998-31576200)
chr7 (19-225)||(31604660-31604866)
chr7 (19-222)||(31618264-31618467)
chr7 (19-207)||(31532393-31532581)
chr7 (19-225)||(31541016-31541222)
chr7 (18-229)||(31585403-31585614)
chr7 (23-225)||(31572868-31573064)
chr7 (19-222)||(33305180-33305383)
chr7 (59-229)||(31439041-31439211)
chr7 (46-108)||(21898417-21898479)
[»] scaffold0394 (1 HSPs)
scaffold0394 (23-229)||(1940-2146)
[»] chr4 (1 HSPs)
chr4 (23-229)||(15063388-15063594)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 52174545 - 52174335
Alignment:
Q  19 acatgaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaat 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52174545 acatgaccctccagtgtcatagttctttcttcctccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaat 52174446  T
Q  119 gctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52174445 gctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccga 52174346  T
Q  219 aatcagatatt 229  Q
    |||||||||||    
T  52174345 aatcagatatt 52174335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 9069628 - 9069683
Alignment:
Q  41 ttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcaga 96  Q
    |||||||||| ||||| |||||| || | |||||| ||||||||||||||||||||    
T  9069628 ttctttcttcctccaaccatttctagcaacaacattccataactgtatatatcaga 9069683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 31595055 - 31595257
Alignment:
Q  23 gaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaatgctc 122  Q
    ||||||||||| | |||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  31595055 gaccctccagtttgatagttctttcttcctccaatcatttcaagaatcaacataccataactgtatacatcagatttgtaagaaacaccaccaaatgctc 31595154  T
Q  123 tactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccgaaatc 222  Q
    | ||| ||||||||||||||||||||||||||||||||||||| ||  |||||||||||| |||||| ||| |||| ||||||||||||||||| |||||    
T  31595155 tgctaaatacttctggcgccatatatcctatagttcctcttgtccccggtattgacacaatactatcattcatttgacatatttttgctagtccaaaatc 31595254  T
Q  223 aga 225  Q
    |||    
T  31595255 aga 31595257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 31608254 - 31608464
Alignment:
Q  19 acatgaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaat 118  Q
    ||||||||| |||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  31608254 acatgacccgccagtgtcgtagttcttccttcctccaatcatttcaagaatcaacatgccataactatatacatcagatttgtaagaaacaccaccaaat 31608353  T
Q  119 gctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccga 218  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||| || | ||||||||||| ||| ||||||||||| |||||||| || ||||| |    
T  31608354 gctctactaaatacttctggcgccatatatcctatagttcctcgtgtccccaatattgacacaatactgtccttcctttgacatattttagcaagtccaa 31608453  T
Q  219 aatcagatatt 229  Q
    |||||||||||    
T  31608454 aatcagatatt 31608464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 31614536 - 31614741
Alignment:
Q  20 catgaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaatg 119  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||| |||||||||||||||||| || |||||||    
T  31614536 catgaccctccagtgtcatagttctttcttcctccaatcatttcaagaatcaacattccataactatatacatcagatttgtaagaaactccgccaaatg 31614635  T
Q  120 ctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccgaa 219  Q
    |||| ||| |||||||||| |||||||||||||||||||||||||| || | ||||||||||| |||||||||| ||||||||||||| |||||||| ||    
T  31614636 ctctgctaaatacttctggtgccatatatcctatagttcctcttgtacctaatattgacacaatactatccttcttttggcatattttcgctagtccaaa 31614735  T
Q  220 atcaga 225  Q
    ||||||    
T  31614736 atcaga 31614741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 31575998 - 31576200
Alignment:
Q  23 gaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaatgctc 122  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| ||    
T  31575998 gaccctccagtgtcatagttcttccttcctccgatcatttcaagaatcaacatgccataactatatacatcagatttgtaagaaactccaccaaatgatc 31576097  T
Q  123 tactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccgaaatc 222  Q
    || || || ||||||| |||||||||||||| ||||||||||  || | ||||||||||| |||||||||| ||||||||||||| |||||||| |||||    
T  31576098 tattaaatgcttctggtgccatatatcctattgttcctcttgcccctaatattgacacaatactatccttcttttggcatattttcgctagtccaaaatc 31576197  T
Q  223 aga 225  Q
    |||    
T  31576198 aga 31576200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 31604660 - 31604866
Alignment:
Q  19 acatgaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaat 118  Q
    ||||||||| |||||||| |||||||| |||| ||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||    
T  31604660 acatgacccgccagtgtcgtagttcttccttcctccgatcatttcaagaatcaacatgccataactatatacatcagatttgtaagaaactccaccaaat 31604759  T
Q  119 gctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccga 218  Q
    | |||| || || ||||||| |||||||||||||| ||||||||||  || | ||||||||||| |||||||||| ||||||||||||| |||||||| |    
T  31604760 gatctattaaatgcttctggtgccatatatcctattgttcctcttgcccctaatattgacacaatactatccttcttttggcatattttcgctagtccaa 31604859  T
Q  219 aatcaga 225  Q
    |||||||    
T  31604860 aatcaga 31604866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 31618264 - 31618467
Alignment:
Q  19 acatgaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaat 118  Q
    |||||||||||| ||||| |||||||| |||| ||| ||||||||||||||||||||||||||||| |||| ||||||| |||| ||||| ||||||||     
T  31618264 acatgaccctcccgtgtcgtagttcttccttcctccgatcatttcaagaatcaacatgccataactatatacatcagatctgtacgaaactccaccaaac 31618363  T
Q  119 gctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccga 218  Q
    ||||||||| ||| |||||| ||||| |||||||||||||||||||  || | ||||||||||| |||||||||||||||||||||||| |||||||| |    
T  31618364 gctctactaaatatttctggtgccatgtatcctatagttcctcttgcccctaatattgacacaatactatccttcctttggcatattttagctagtccaa 31618463  T
Q  219 aatc 222  Q
    ||||    
T  31618464 aatc 31618467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 31532393 - 31532581
Alignment:
Q  19 acatgaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaat 118  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| ||||| ||||| ||||||||||||| |||||| |||| |||||| |||||| ||    
T  31532393 acatgaccctccagtgtcataattctttcttcctccaatcatttctagaattaacatcccataactgtatacatcagacttgtgagaaactccaccatat 31532492  T
Q  119 gctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttt 207  Q
    | || |||| | |||||||| || || |||||||| |||||||||||||||||||| ||||||| ||| || ||| |||||||||||||    
T  31532493 gttcgactaaacacttctggtgctatgtatcctatggttcctcttgtgccaagtatagacacaatactgtcattcttttggcatatttt 31532581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 31541016 - 31541222
Alignment:
Q  19 acatgaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaat 118  Q
    ||||||||||||||||||||| ||||||||||  |||| |||||| ||||| ||||| |||||||| |||| |||||| || | |||||| |||||| ||    
T  31541016 acatgaccctccagtgtcataattctttcttcccccaaccatttctagaattaacataccataactatatacatcagacttatgagaaactccaccatat 31541115  T
Q  119 gctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccga 218  Q
    | ||  ||  |||||||||| || |||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||||||| ||| |||||||| |    
T  31541116 gttcggctgaatacttctggtgctatatatcctatagttcctcttgtgccaagtaaagacacaatactatcattcctttggcatactttagctagtccaa 31541215  T
Q  219 aatcaga 225  Q
    |||||||    
T  31541216 aatcaga 31541222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 31585403 - 31585614
Alignment:
Q  18 cacatgaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaa 117  Q
    ||||||| ||||| ||||| |||||||| || | ||| || ||||| ||||||| |||||||||||| || | |||||| |||| |||||| ||||||||    
T  31585403 cacatgaacctcctgtgtcgtagttcttcctacctccgataatttctagaatcagcatgccataactatacacatcagacttgtgagaaactccaccaaa 31585502  T
Q  118 tgctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccg 217  Q
     |||||| |  ||| |||||| |||||||||||||||||||||||||  || || |||||||||  |||||||||| || |||||||||||||||||||     
T  31585503 ggctctaatgaatatttctggtgccatatatcctatagttcctcttgcccctagcattgacacagtactatccttctttcggcatatttttgctagtcca 31585602  T
Q  218 aaatcagatatt 229  Q
    ||||||||||||    
T  31585603 aaatcagatatt 31585614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 31573064 - 31572868
Alignment:
Q  23 gaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaatgctc 122  Q
    |||||||| |||||||||||||||||||  ||||||||||| | ||| ||||| |||||      || |||||| |||| |||||| ||||||||  |||    
T  31573064 gaccctcctgtgtcatagttctttcttccaccaatcatttctaaaattaacataccata------tacatcagacttgtgagaaactccaccaaacactc 31572971  T
Q  123 tactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccgaaatc 222  Q
    | ||| ||||||| || || || |||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||  |||||||| |||||    
T  31572970 tgctaaatacttcaggagctatgtatcctatagttccccttgtgccaagtatggacacaatactatccttcctttggcatatttgagctagtccaaaatc 31572871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 33305383 - 33305180
Alignment:
Q  19 acatgaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaat 118  Q
    |||||||||||| |||||||| ||||||||||  || |||||||| || || ||||| ||||||||||||| ||| || || | |||||| |||||||||    
T  33305383 acatgaccctcccgtgtcataattctttcttcccccgatcatttctagtattaacataccataactgtatacatcggacttatgagaaactccaccaaat 33305284  T
Q  119 gctctactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccga 218  Q
    | || |||| ||||||| || || || |||||||||||||||||||| |||||||| || ||||  |||||||||||||| |||||||  |||||||| |    
T  33305283 gttcgactaaatacttccggtgctatgtatcctatagttcctcttgtaccaagtatggatacaatgctatccttcctttgacatatttgagctagtccaa 33305184  T
Q  219 aatc 222  Q
    ||||    
T  33305183 aatc 33305180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 229
Target Start/End: Complemental strand, 31439211 - 31439041
Alignment:
Q  59 atttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaatgctctactatatacttctggcgccatatatcctatagttc 158  Q
    ||||| ||| ||||||||||||||||||||| |||||| ||  ||||||| ||||||||||||| |||  |||| || || || ||  | ||||||||||    
T  31439211 atttcgagagtcaacatgccataactgtatacatcagacttagaagaaactccaccaaatgctcgactgaatacctcgggtgctatgaagcctatagttc 31439112  T
Q  159 ctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccgaaatcagatatt 229  Q
    |||||||||||||||  || |||||||| || ||| |||| |||||||| ||||| || ||||||||||||    
T  31439111 ctcttgtgccaagtagggaaacaacactctctttcttttgacatattttagctagaccaaaatcagatatt 31439041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 21898479 - 21898417
Alignment:
Q  46 tcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaac 108  Q
    ||||||||||||||| |||| ||||||||| |||||||| |||||||||||||| | ||||||    
T  21898479 tcttcttccaatcatgtcaataatcaacattccataactatatatatcagatttttcagaaac 21898417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 1940 - 2146
Alignment:
Q  23 gaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaatgctc 122  Q
    ||||| ||||||||||| |||||| ||| |||  ||||||||||||||||||||||||||||||||| |||||| ||  |||||||  ||||||| ||||    
T  1940 gacccgccagtgtcataattcttttttcctccggtcatttcaagaatcaacatgccataactgtatacatcagacttagaagaaactgcaccaaaagctc 2039  T
Q  123 tactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccgaaatc 222  Q
     |||| ||||||| || |  || || ||||||||||||||||| ||||| || ||||||||||| || ||| |||| |||||||| || || || |||||    
T  2040 gactaaatacttccggtgatatgtagcctatagttcctcttgtcccaagcatggacacaacactctctttcttttgacatattttagcaagaccaaaatc 2139  T
Q  223 agatatt 229  Q
    |||||||    
T  2140 agatatt 2146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 229
Target Start/End: Complemental strand, 15063594 - 15063388
Alignment:
Q  23 gaccctccagtgtcatagttctttcttcttccaatcatttcaagaatcaacatgccataactgtatatatcagatttgtaagaaacaccaccaaatgctc 122  Q
    ||||| ||||||||||| |||||| ||| |||  ||||||||||||||||||||||||||||||||| |||||| ||  |||||||  ||||||| ||||    
T  15063594 gacccgccagtgtcataattcttttttcctccggtcatttcaagaatcaacatgccataactgtatacatcagacttagaagaaactgcaccaaaagctc 15063495  T
Q  123 tactatatacttctggcgccatatatcctatagttcctcttgtgccaagtattgacacaacactatccttcctttggcatatttttgctagtccgaaatc 222  Q
     |||| ||||||| || |  || || ||||||||||||||||| ||||| || ||||||||||| || ||| |||| |||||||| || || || |||||    
T  15063494 gactaaatacttccggtgatatgtagcctatagttcctcttgtcccaagcatggacacaacactctctttcttttgacatattttagcaagaccaaaatc 15063395  T
Q  223 agatatt 229  Q
    |||||||    
T  15063394 agatatt 15063388  T

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