View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_high_88 (Length: 239)
Name: NF13771_high_88
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_high_88 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 48490177 - 48490388
Alignment:
| Q |
1 |
ttatatgtttcgttgtgaagtcaagtaacccacacatctaatattaatcttttatttattcctaatatttttaatatctgtgaagaaacttaaagttaca |
100 |
Q |
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| T |
48490177 |
ttatatgtttcgttgtgaagtcaagtaacccacacatctaatattaatcttttatttattcctaatatttttaatatctgtgaagaaacttaaagttaca |
48490276 |
T |
|
| Q |
101 |
cgtaacattagatgtgtagagaatagggtagaagatataannnnnnnggtcaaattgatttttaacttgaattagcttggtaggcacgagttggcatgga |
200 |
Q |
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| T |
48490277 |
cgtaacattagatgtgtagagaatagggtagaagatataatttttttggtcaaattgatttttaacttgaattagcttggtaggcacgagttggcatgga |
48490376 |
T |
|
| Q |
201 |
aaaatctaaaac |
212 |
Q |
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|||||||||||| |
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| T |
48490377 |
aaaatctaaaac |
48490388 |
T |
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