View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13771_high_97 (Length: 235)

Name: NF13771_high_97
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13771_high_97
NF13771_high_97
[»] chr1 (2 HSPs)
chr1 (5-220)||(39360251-39360466)
chr1 (155-198)||(32986341-32986384)
[»] chr2 (2 HSPs)
chr2 (98-201)||(45437329-45437432)
chr2 (71-203)||(13770876-13771008)
[»] chr8 (1 HSPs)
chr8 (98-198)||(8111472-8111572)
[»] chr4 (2 HSPs)
chr4 (101-204)||(33721000-33721103)
chr4 (101-204)||(33718981-33719084)
[»] chr7 (2 HSPs)
chr7 (101-198)||(38809669-38809769)
chr7 (152-198)||(38822672-38822718)
[»] chr3 (1 HSPs)
chr3 (101-135)||(45013996-45014030)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 39360251 - 39360466
Alignment:
Q  5 ttcttattagggtttttcatttgaacagttaatgaacgagttgagaagccactgaaaaaacagaggaagaatctctacagaggaattcgacagcgtccat 104  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39360251 ttcttatttgggtttttcatttgaacagttaatgaacgagttgagaagccactgaaaaaacagaggaagaatctctatagaggaattcgacagcgtccat 39360350  T
Q  105 ggggaaaatgggctgcagagattcgtgatccaagaaaaggagttcgtgtttggcttggtacattcaacactgctgaagaagctgctagagcttacgacaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39360351 ggggaaaatgggctgcagagattcgtgatccaagaaaaggagttcgtgtttggcttggtacattcaacactgctgaagaagctgctagagcttacgacaa 39360450  T
Q  205 agaagctcgaaaaatc 220  Q
    ||||||||||||||||    
T  39360451 agaagctcgaaaaatc 39360466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 32986341 - 32986384
Alignment:
Q  155 tggcttggtacattcaacactgctgaagaagctgctagagctta 198  Q
    |||||||| || ||||||||||||||||||||||| ||||||||    
T  32986341 tggcttggcactttcaacactgctgaagaagctgcaagagctta 32986384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 98 - 201
Target Start/End: Original strand, 45437329 - 45437432
Alignment:
Q  98 cgtccatggggaaaatgggctgcagagattcgtgatccaagaaaaggagttcgtgtttggcttggtacattcaacactgctgaagaagctgctagagctt 197  Q
    |||||||||||||||||||| || ||||| ||||| || ||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||| |    
T  45437329 cgtccatggggaaaatgggcagctgagatccgtgacccgagaaaaggagttcgtgtttggctcggaactttcaacactgctgaagaagctgcaagagcct 45437428  T
Q  198 acga 201  Q
    ||||    
T  45437429 acga 45437432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 203
Target Start/End: Complemental strand, 13771008 - 13770876
Alignment:
Q  71 aagaatctctacagaggaattcgacagcgtccatggggaaaatgggctgcagagattcgtgatccaagaaaaggagttcgtgtttggcttggtacattca 170  Q
    |||||| | |||||||||||  | ||| | |||||||| |||||||||||||| ||  | || |||  | |||| |||||||||||||| ||||| |||     
T  13771008 aagaatgtttacagaggaatcaggcagaggccatggggcaaatgggctgcagaaataagggacccacaacaaggtgttcgtgtttggctaggtactttct 13770909  T
Q  171 acactgctgaagaagctgctagagcttacgaca 203  Q
      || ||||||||||| |||||||| |||||||    
T  13770908 caacagctgaagaagcagctagagcctacgaca 13770876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 8111572 - 8111472
Alignment:
Q  98 cgtccatggggaaaatgggctgcagagattcgtgatccaagaaaaggagttcgtgtttggcttggtacattcaacactgctgaagaagctgctagagctt 197  Q
    |||||||||||||||||||| || ||||| ||||| ||||| |||||||| ||||| ||||| || || ||||||||||||||||||||||| |||||||    
T  8111572 cgtccatggggaaaatgggcagctgagatccgtgacccaaggaaaggagtccgtgtctggctcggaactttcaacactgctgaagaagctgcaagagctt 8111473  T
Q  198 a 198  Q
    |    
T  8111472 a 8111472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 33721000 - 33721103
Alignment:
Q  101 ccatggggaaaatgggctgcagagattcgtgatccaagaaaaggagttcgtgtttggcttggtacattcaacactgctgaagaagctgctagagcttacg 200  Q
    |||||||||||||||||||| ||||||||||| || |||   |  ||||||||||||||||| || || | ||| || || |||||||||||||||||||    
T  33721000 ccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggcttggaacctttaccacggcggaggaagctgctagagcttacg 33721099  T
Q  201 acaa 204  Q
    ||||    
T  33721100 acaa 33721103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 33718981 - 33719084
Alignment:
Q  101 ccatggggaaaatgggctgcagagattcgtgatccaagaaaaggagttcgtgtttggcttggtacattcaacactgctgaagaagctgctagagcttacg 200  Q
    |||||||||||||||||||| ||||||||||| || |||   |  |||||||||||||| || || || | ||| || || |||||||| |||||||| |    
T  33718981 ccatggggaaaatgggctgctgagattcgtgacccgagacgtgctgttcgtgtttggctcggaacctttaccacggcggaggaagctgccagagcttatg 33719080  T
Q  201 acaa 204  Q
    ||||    
T  33719081 acaa 33719084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 38809669 - 38809769
Alignment:
Q  101 ccatggggaaaatgggctgcagagattcgtgatcca---agaaaaggagttcgtgtttggcttggtacattcaacactgctgaagaagctgctagagctt 197  Q
    |||||||||||||| || ||||||||||| ||| |    ||| | |||| ||| ||||||||||||||||| ||||||||||| |||||||| |||||||    
T  38809669 ccatggggaaaatgtgcagcagagattcgagattcggctagacatggagctcgagtttggcttggtacatttaacactgctgaggaagctgcaagagctt 38809768  T
Q  198 a 198  Q
    |    
T  38809769 a 38809769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 38822672 - 38822718
Alignment:
Q  152 gtttggcttggtacattcaacactgctgaagaagctgctagagctta 198  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||||||    
T  38822672 gtttggcttggtacatttaacactgctgaggaagctgcaagagctta 38822718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 45014030 - 45013996
Alignment:
Q  101 ccatggggaaaatgggctgcagagattcgtgatcc 135  Q
    ||||||||||| |||||||||||||||||||||||    
T  45014030 ccatggggaaagtgggctgcagagattcgtgatcc 45013996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University