View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_1 (Length: 731)
Name: NF13771_low_1
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 671
Target Start/End: Original strand, 40923955 - 40924645
Alignment:
| Q |
1 |
tgaaacttctttattgttgatcacaattctttcacaaaa-aacattaatacgcattgccattgctctttggttacttcaagatataattgcacaatacaa |
99 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40923955 |
tgaaacttctttattgttgatcacaattctttcaaaaaaaaacattaatacgcattgccattgctctttggttacttcaagatataattgcacactacaa |
40924054 |
T |
|
| Q |
100 |
aattgcgtaaaataacacaaatgtgaaaaaggacaacaatatagagaaggatgtggatgagaatgtaagaagagatcaagagagtgcaatgaagatagaa |
199 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40924055 |
aattgcgtaagataacataaatgtgaaaaaggacaacaatatagagaaggatgtgaatgagaatgtaagaagagatcaagagagtgcaatgaagatagaa |
40924154 |
T |
|
| Q |
200 |
atggatgaaaacaagtgaagcataaaacacaaacgcctgtgaatgaagtgaatctagtatggaaaatgagaattggtatcatactttgtaatcttcatct |
299 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40924155 |
atggatgaaaacaagtgaagcataaaacacaaacgccagtgaatgaagcgaatctagtatggaaaatgagaattggtatcatactttgtgatcttcatct |
40924254 |
T |
|
| Q |
300 |
aagaaactaacaaatccttcacagttgttgtaggttacgttgaccaatgggcaatgacgatggcagagctgaggggccattgagaatgttcaaggctgaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40924255 |
aagaaactaacaaatccttcacagttgttgtaggttacgttgac-------caatgaccatggcagagctgaggggccattgagaatgttcaaggctgaa |
40924347 |
T |
|
| Q |
400 |
tgaaaaagagttagaagaagattgtcccatatagtatcgatgtatc------------cttgttaactaacaccgagcatgctaatataaatttttgtca |
487 |
Q |
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| T |
40924348 |
tgaaaaagagttagaagaagattgtcccatatagtatcgatgtatccctcaaatattacttgttaactaacaccgagcatgctaatataaatttttgtca |
40924447 |
T |
|
| Q |
488 |
atcaactcaaaatctaacatagatcc--------------gcagtgtttaaaaaccggttaataacaatgattaaactaaatactaagtaattatcagaa |
573 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40924448 |
atcaactcaaaatctaacatagatccgcagtcacatatttgcagtgtttaagaaccagttaataacaatggttaaactaaatactaagtaattatcagaa |
40924547 |
T |
|
| Q |
574 |
cttcaacaaaattaacagaaatattaactgaagtgtcctatatgaagatgataattcttgaaacaacaaggtagaattgcaaaccagaaaacataaaa |
671 |
Q |
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| T |
40924548 |
cttcaacaaaattaacagaaatattaactgaagtgtcctatatgaagatgataattcttgaaacaacaaggtagaattgcaaaccagaaaacataaaa |
40924645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 665 - 711
Target Start/End: Original strand, 40924660 - 40924706
Alignment:
| Q |
665 |
cataaaaatactagcaagtgctccacagaaaacttcattccgaccat |
711 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40924660 |
cataaaaatactagcaagtgctccacagaaaacttcattccgaccat |
40924706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 571 - 607
Target Start/End: Original strand, 34990691 - 34990727
Alignment:
| Q |
571 |
gaacttcaacaaaattaacagaaatattaactgaagt |
607 |
Q |
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| T |
34990691 |
gaacttcaacaaaattaacagaaatattaactgaagt |
34990727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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