View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13771_low_105 (Length: 230)

Name: NF13771_low_105
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13771_low_105
NF13771_low_105
[»] chr3 (12 HSPs)
chr3 (13-174)||(9856430-9856591)
chr3 (35-87)||(17755844-17755896)
chr3 (35-87)||(19057164-19057216)
chr3 (35-87)||(9240746-9240798)
chr3 (35-87)||(25716844-25716896)
chr3 (36-87)||(25937844-25937895)
chr3 (91-149)||(9240859-9240917)
chr3 (91-151)||(5565074-5565134)
chr3 (95-145)||(9241009-9241059)
chr3 (91-145)||(17755736-17755790)
chr3 (91-145)||(19057056-19057110)
chr3 (107-151)||(837271-837315)
[»] chr8 (8 HSPs)
chr8 (35-90)||(13461805-13461860)
chr8 (35-87)||(38294910-38294962)
chr8 (93-150)||(604382-604439)
chr8 (55-90)||(38294969-38295004)
chr8 (93-150)||(604557-604614)
chr8 (91-140)||(13461879-13461928)
chr8 (91-140)||(31249373-31249422)
chr8 (35-87)||(39616915-39616967)
[»] chr5 (4 HSPs)
chr5 (35-87)||(7779559-7779611)
chr5 (91-150)||(7779439-7779498)
chr5 (91-150)||(14854327-14854386)
chr5 (91-140)||(3432999-3433048)
[»] chr7 (11 HSPs)
chr7 (91-149)||(4455363-4455421)
chr7 (35-87)||(16377562-16377614)
chr7 (35-87)||(4455482-4455534)
chr7 (35-87)||(16376422-16376474)
chr7 (37-87)||(5553812-5553862)
chr7 (94-150)||(4454919-4454975)
chr7 (107-150)||(23591481-23591524)
chr7 (91-150)||(38694861-38694920)
chr7 (35-85)||(24788724-24788774)
chr7 (91-140)||(16377478-16377527)
chr7 (55-87)||(5553869-5553901)
[»] scaffold0090 (1 HSPs)
scaffold0090 (35-87)||(12418-12470)
[»] chr2 (15 HSPs)
chr2 (35-87)||(17930418-17930470)
chr2 (36-93)||(41075759-41075816)
chr2 (36-93)||(41076324-41076381)
chr2 (35-87)||(11131355-11131407)
chr2 (91-149)||(15255830-15255888)
chr2 (35-87)||(38857747-38857799)
chr2 (91-151)||(41076470-41076530)
chr2 (107-150)||(29550128-29550171)
chr2 (91-150)||(38857854-38857913)
chr2 (36-83)||(41076042-41076089)
chr2 (107-149)||(3249867-3249909)
chr2 (95-149)||(17930535-17930589)
chr2 (58-90)||(11131313-11131345)
chr2 (35-87)||(15256501-15256553)
chr2 (54-90)||(17930476-17930512)
[»] chr6 (15 HSPs)
chr6 (35-89)||(12296005-12296059)
chr6 (36-86)||(17201476-17201526)
chr6 (35-87)||(24223463-24223515)
chr6 (91-151)||(24223576-24223636)
chr6 (91-149)||(12295927-12295985)
chr6 (35-85)||(17079943-17079993)
chr6 (93-149)||(17199982-17200038)
chr6 (35-87)||(24223108-24223160)
chr6 (91-150)||(16799563-16799622)
chr6 (55-90)||(17200571-17200606)
chr6 (91-138)||(17203662-17203709)
chr6 (37-87)||(6601875-6601925)
chr6 (55-89)||(16799510-16799544)
chr6 (91-149)||(17200320-17200378)
chr6 (93-150)||(24223211-24223268)
[»] chr4 (6 HSPs)
chr4 (37-87)||(19553377-19553427)
chr4 (91-153)||(46883329-46883391)
chr4 (35-86)||(9711335-9711385)
chr4 (40-87)||(29013796-29013843)
chr4 (95-150)||(47428297-47428352)
chr4 (36-90)||(46883410-46883466)
[»] chr1 (8 HSPs)
chr1 (35-87)||(11928311-11928363)
chr1 (35-87)||(41460966-41461018)
chr1 (35-87)||(49484051-49484103)
chr1 (36-87)||(52740982-52741033)
chr1 (35-87)||(46533030-46533082)
chr1 (35-77)||(23482588-23482630)
chr1 (109-150)||(6537500-6537541)
chr1 (35-87)||(41462629-41462681)
[»] scaffold0368 (1 HSPs)
scaffold0368 (40-87)||(279-326)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 9856430 - 9856591
Alignment:
Q  13 tgatatgactaaaaagctcatcggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattgctgttagagggaaattataaggtta 112  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  9856430 tgatatgaatgaaaagctcatcggagaaatattagggatttttgcattttagaggaaatttgttagattaaattgctgttagagggaaattattaggtta 9856529  T
Q  113 aattgttacagatctaataaaattaatagataaggatacaaaatattttgaaataatccttt 174  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9856530 agttgttacagatctaataaaattaatagataaggatacaaaatattttgaaataatccttt 9856591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 17755896 - 17755844
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  17755896 ggagaaatattagggattgctgcattttagaggaaatttgttaggttaaattg 17755844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 19057216 - 19057164
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  19057216 ggagaaatattagggattgctgcattttagaggaaatttgttaggttaaattg 19057164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 9240746 - 9240798
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||||||||    
T  9240746 ggagaaatattagggattgctgcatttttgaggaaatttgttaggttaaattg 9240798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 25716844 - 25716896
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    ||||||||||||||||||  ||||||||||||| |||||||||| ||||||||    
T  25716844 ggagaaatattagggattgctgcattttagagggaatttgttagcttaaattg 25716896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 25937895 - 25937844
Alignment:
Q  36 gagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    |||||||||||||||||  ||||| ||||||| |||||||||||||||||||    
T  25937895 gagaaatattagggattgctgcatgttagagggaatttgttaggttaaattg 25937844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 9240859 - 9240917
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaatagataaggat 149  Q
    ||||||||||||||| ||||||| ||||| ||||  |||||||||||||| ||||||||    
T  9240859 ttagagggaaattattaggttaagttgttgcagacgtaataaaattaataaataaggat 9240917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 5565134 - 5565074
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaatagataaggatac 151  Q
    ||||||||||| ||| ||||||| ||||| |||| |||||||||||||||  |||||||||    
T  5565134 ttagagggaaaatattaggttaagttgttgcagacctaataaaattaataattaaggatac 5565074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 9241009 - 9241059
Alignment:
Q  95 agggaaattataaggttaaattgttacagatctaataaaattaatagataa 145  Q
    ||||||||||| ||||||| ||||| |||| ||||||||||||||| ||||    
T  9241009 agggaaattattaggttaagttgttgcagagctaataaaattaataaataa 9241059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 17755790 - 17755736
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaatagataa 145  Q
    ||||||||||||||| ||||||||||| | | || ||||||||||||||| ||||    
T  17755790 ttagagggaaattattaggttaaattgctgcggacctaataaaattaataaataa 17755736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 19057110 - 19057056
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaatagataa 145  Q
    ||||||||||||||| ||||||||||| | | || ||||||||||||||| ||||    
T  19057110 ttagagggaaattattaggttaaattgctgcggacctaataaaattaataaataa 19057056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 837271 - 837315
Alignment:
Q  107 aggttaaattgttacagatctaataaaattaatagataaggatac 151  Q
    ||||||||||||| ||||  |||||||||||||| ||||||||||    
T  837271 aggttaaattgttgcagacataataaaattaataaataaggatac 837315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 13461805 - 13461860
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattgctg 90  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  13461805 ggagaaatattagggattgttgcattttagagggaatttgttaggttaaattgctg 13461860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 38294910 - 38294962
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  38294910 ggagaaatattagggattgctgcattttagagggaatttgttaggttaaattg 38294962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 604382 - 604439
Alignment:
Q  93 agagggaaattataaggttaaattgttacagatctaataaaattaatagataaggata 150  Q
    ||||||||| ||| ||||||| ||| ||||||||||| |||||||||| |||||||||    
T  604382 agagggaaaatattaggttaagttgctacagatctaacaaaattaataaataaggata 604439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 38294969 - 38295004
Alignment:
Q  55 tgcattttagaggaaatttgttaggttaaattgctg 90  Q
    ||||||||||| ||||||||||||||||||||||||    
T  38294969 tgcattttagatgaaatttgttaggttaaattgctg 38295004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 604557 - 604614
Alignment:
Q  93 agagggaaattataaggttaaattgttacagatctaataaaattaatagataaggata 150  Q
    ||||||||| ||| ||||||| ||| ||||||||||| |||||||||| | |||||||    
T  604557 agagggaaaatattaggttaagttgctacagatctaacaaaattaataaacaaggata 604614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 13461879 - 13461928
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaata 140  Q
    ||||||||||||||  ||||||| ||||| || |||||||||||||||||    
T  13461879 ttagagggaaattagtaggttaacttgttgcaaatctaataaaattaata 13461928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 31249373 - 31249422
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaata 140  Q
    ||||||||||||||| | ||||| ||| | ||||||||||||||||||||    
T  31249373 ttagagggaaattattatgttaagttgatgcagatctaataaaattaata 31249422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 39616915 - 39616967
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    |||||||||||||||||    ||||||||| || |||||||||||||||||||    
T  39616915 ggagaaatattagggatcacggcattttagtgggaatttgttaggttaaattg 39616967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 7779611 - 7779559
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  7779611 ggagaaatattagggattgttgcattttagagggaatttgttaggttaaattg 7779559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 7779498 - 7779439
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaatagataaggata 150  Q
    ||||||||||||||| ||||||| |||||  ||| ||||||||||||||| |||||||||    
T  7779498 ttagagggaaattattaggttaagttgttgtagacctaataaaattaataaataaggata 7779439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 14854386 - 14854327
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaatagataaggata 150  Q
    ||||||||||||||| ||||||| ||| | || | ||||||||||||||| |||||||||    
T  14854386 ttagagggaaattattaggttaagttgctgcaaacctaataaaattaataaataaggata 14854327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 3433048 - 3432999
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaata 140  Q
    ||||||| ||||||| ||||||| ||||| || |||||||||||||||||    
T  3433048 ttagaggaaaattattaggttaagttgttgcaaatctaataaaattaata 3432999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 4455421 - 4455363
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaatagataaggat 149  Q
    ||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||||||||    
T  4455421 ttagagggaaattattaggttaaattgttgcagacctaataaaattaataaataaggat 4455363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 16377562 - 16377614
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  16377562 ggagaaatattagggattgctgcattttagaggaaatttgataggttaaattg 16377614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 4455534 - 4455482
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||| ||||    
T  4455534 ggagaaatattagggattgctgcattttagagggaatttgttaggttatattg 4455482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 16376422 - 16376474
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    ||||||||||||||||||  |||| |||||||| |||||||||||||||||||    
T  16376422 ggagaaatattagggattgctgcactttagagggaatttgttaggttaaattg 16376474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 5553812 - 5553862
Alignment:
Q  37 agaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    |||||||||| ||||| |||||||||||||  |||||||||||||||||||    
T  5553812 agaaatattaaggattgttgcattttagagagaatttgttaggttaaattg 5553862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 4454975 - 4454919
Alignment:
Q  94 gagggaaattataaggttaaattgttacagatctaataaaattaatagataaggata 150  Q
    |||||||| ||| ||||||| ||||| |||| ||||||||||||||| |||||||||    
T  4454975 gagggaaaatattaggttaagttgttgcagacctaataaaattaataaataaggata 4454919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 23591481 - 23591524
Alignment:
Q  107 aggttaaattgttacagatctaataaaattaatagataaggata 150  Q
    ||||||||||||| ||||||||| |||||||||| |||||||||    
T  23591481 aggttaaattgttgcagatctaacaaaattaataaataaggata 23591524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 38694861 - 38694920
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaatagataaggata 150  Q
    ||||||||||||||| ||||||| ||| | |||| |||||||| |||||| |||||||||    
T  38694861 ttagagggaaattattaggttaagttgctgcagacctaataaacttaataaataaggata 38694920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 24788724 - 24788774
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaat 85  Q
    ||||||||||||| ||||  |||||||| | ||||||||||||||||||||    
T  24788724 ggagaaatattagtgattgctgcatttttgtggaaatttgttaggttaaat 24788774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 16377478 - 16377527
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaata 140  Q
    ||||||||||||||| ||||||| ||  | ||||||||||||||||||||    
T  16377478 ttagagggaaattattaggttaagttactgcagatctaataaaattaata 16377527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 5553869 - 5553901
Alignment:
Q  55 tgcattttagaggaaatttgttaggttaaattg 87  Q
    ||||||||||| |||||||||||||||||||||    
T  5553869 tgcattttagatgaaatttgttaggttaaattg 5553901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 12418 - 12470
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    |||||||||||||||||| ||| |||||||||| |||||||||||||||||||    
T  12418 ggagaaatattagggattgttgtattttagagggaatttgttaggttaaattg 12470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 17930418 - 17930470
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    ||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  17930418 ggagaaatattagggattgctgcattttagagggaatttgttaggttaaattg 17930470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 41075759 - 41075816
Alignment:
Q  36 gagaaatattagggatttttgcattttagaggaaatttgttaggttaaattgctgtta 93  Q
    |||||||||||||||||  ||||||||||||  ||||||||||||||||||| |||||    
T  41075759 gagaaatattagggattgctgcattttagagagaatttgttaggttaaattgttgtta 41075816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 41076324 - 41076381
Alignment:
Q  36 gagaaatattagggatttttgcattttagaggaaatttgttaggttaaattgctgtta 93  Q
    |||||||||||||||||  ||||||||||||  ||||||||||||||||||| |||||    
T  41076324 gagaaatattagggattgctgcattttagagagaatttgttaggttaaattgttgtta 41076381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 11131407 - 11131355
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    ||||||||||||||||||  ||||||||||||| |||||| ||||||||||||    
T  11131407 ggagaaatattagggattgctgcattttagagggaatttgataggttaaattg 11131355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 15255830 - 15255888
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaatagataaggat 149  Q
    ||||||||||||||| ||||||| ||||| |||| ||||| ||||||||| ||||||||    
T  15255830 ttagagggaaattattaggttaagttgttgcagacctaattaaattaataaataaggat 15255888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 38857747 - 38857799
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    |||||||||||||||||| |||||||||| ||  ||||| |||||||||||||    
T  38857747 ggagaaatattagggattgttgcattttaaagagaatttattaggttaaattg 38857799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 41076470 - 41076530
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaatagataaggatac 151  Q
    |||||| |||||||| ||||||| ||||| ||||  |||||||||||||| ||||||||||    
T  41076470 ttagagagaaattattaggttaagttgttgcagacttaataaaattaataaataaggatac 41076530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 29550171 - 29550128
Alignment:
Q  107 aggttaaattgttacagatctaataaaattaatagataaggata 150  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||    
T  29550171 aggttaaattgttgcagacctaataaaattaataaataaggata 29550128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 38857854 - 38857913
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaatagataaggata 150  Q
    ||||||||||||||| | ||||| ||| || ||| ||||||||||||||| |||||||||    
T  38857854 ttagagggaaattattaagttaagttgctatagacctaataaaattaataaataaggata 38857913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 41076042 - 41076089
Alignment:
Q  36 gagaaatattagggatttttgcattttagaggaaatttgttaggttaa 83  Q
    |||||||||||||||||  ||||||||||||  |||||||||||||||    
T  41076042 gagaaatattagggattgctgcattttagagagaatttgttaggttaa 41076089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 3249867 - 3249909
Alignment:
Q  107 aggttaaattgttacagatctaataaaattaatagataaggat 149  Q
    ||||||||||||| ||||||||| |||||||||| ||||||||    
T  3249867 aggttaaattgttgcagatctaacaaaattaataaataaggat 3249909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 17930535 - 17930589
Alignment:
Q  95 agggaaattataaggttaaattgttacagatctaataaaattaatagataaggat 149  Q
    |||| |||||| ||||||| ||||| |||| ||||||||||||||| ||||||||    
T  17930535 aggggaattattaggttaagttgttgcagacctaataaaattaataaataaggat 17930589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 11131345 - 11131313
Alignment:
Q  58 attttagaggaaatttgttaggttaaattgctg 90  Q
    |||||||| ||||||||||||||||||||||||    
T  11131345 attttagatgaaatttgttaggttaaattgctg 11131313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 15256501 - 15256553
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    |||||||||||||| |||  |||||||||||||  ||||||||| ||||||||    
T  15256501 ggagaaatattaggaattgctgcattttagagggtatttgttagtttaaattg 15256553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 17930476 - 17930512
Alignment:
Q  54 ttgcattttagaggaaatttgttaggttaaattgctg 90  Q
    |||||||||||| | ||||||||||||||||||||||    
T  17930476 ttgcattttagatggaatttgttaggttaaattgctg 17930512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 12296059 - 12296005
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattgct 89  Q
    ||||||||||||| ||||  ||||||||||||| |||||||||||||||||||||    
T  12296059 ggagaaatattagagattgctgcattttagagggaatttgttaggttaaattgct 12296005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 17201526 - 17201476
Alignment:
Q  36 gagaaatattagggatttttgcattttagaggaaatttgttaggttaaatt 86  Q
    |||||||||||||||||  ||||||||||||| ||||||||||||||||||    
T  17201526 gagaaatattagggattgctgcattttagagggaatttgttaggttaaatt 17201476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 24223463 - 24223515
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    ||||||||||||||||||  ||||||||||||| |||||| ||||||||||||    
T  24223463 ggagaaatattagggattgctgcattttagagggaatttgataggttaaattg 24223515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 24223576 - 24223636
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaatagataaggatac 151  Q
    ||||||||||||||| ||||||| ||| | |||| ||||||||||||||| ||||||||||    
T  24223576 ttagagggaaattattaggttaagttgctgcagacctaataaaattaataaataaggatac 24223636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 12295985 - 12295927
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaatagataaggat 149  Q
    |||||||||||| || ||||||| ||||| |||| ||||||||||||||| ||||||||    
T  12295985 ttagagggaaatcattaggttaagttgttgcagacctaataaaattaataaataaggat 12295927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 17079943 - 17079993
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaat 85  Q
    |||||||||||| |||||  ||||||||||||| |||||||||||||||||    
T  17079943 ggagaaatattaaggattgctgcattttagagggaatttgttaggttaaat 17079993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 17200038 - 17199982
Alignment:
Q  93 agagggaaattataaggttaaattgttacagatctaataaaattaatagataaggat 149  Q
    ||||||||| ||| ||||||||||| |||||| |||| |||||||||| ||||||||    
T  17200038 agagggaaaatattaggttaaattgctacagacctaacaaaattaataaataaggat 17199982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 24223108 - 24223160
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    ||||||||||||||||||  ||||||||||||  |||||| ||||||||||||    
T  24223108 ggagaaatattagggattgctgcattttagagtgaatttgataggttaaattg 24223160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 16799563 - 16799622
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaatagataaggata 150  Q
    ||||||||||||||| ||||| | ||| | |||| ||||||||||||||| |||||||||    
T  16799563 ttagagggaaattattaggttcagttgctgcagacctaataaaattaataaataaggata 16799622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 90
Target Start/End: Complemental strand, 17200606 - 17200571
Alignment:
Q  55 tgcattttagaggaaatttgttaggttaaattgctg 90  Q
    ||||||||||| ||||||||||||||||||||||||    
T  17200606 tgcattttagatgaaatttgttaggttaaattgctg 17200571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 17203709 - 17203662
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaa 138  Q
    ||||||||||||||| ||||||| ||||| |||| |||||||||||||    
T  17203709 ttagagggaaattattaggttaagttgttgcagacctaataaaattaa 17203662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 6601875 - 6601925
Alignment:
Q  37 agaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    ||||||||||| ||||  ||||||||||||| |||||||||||| ||||||    
T  6601875 agaaatattagagattgctgcattttagagggaatttgttaggtgaaattg 6601925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 16799510 - 16799544
Alignment:
Q  55 tgcattttagaggaaatttgttaggttaaattgct 89  Q
    ||||||||||| |||||||||||||||||||||||    
T  16799510 tgcattttagatgaaatttgttaggttaaattgct 16799544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 17200378 - 17200320
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaatagataaggat 149  Q
    ||||| ||||||||| ||||||| ||| | |||| ||||||||||||||| ||||||||    
T  17200378 ttagaaggaaattattaggttaagttgctgcagacctaataaaattaataaataaggat 17200320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 24223211 - 24223268
Alignment:
Q  93 agagggaaattataaggttaaattgttacagatctaataaaattaatagataaggata 150  Q
    ||||||||||||| ||||||| ||| | |||| | ||||||||||||| |||||||||    
T  24223211 agagggaaattattaggttaagttgatgcagaccaaataaaattaataaataaggata 24223268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 19553427 - 19553377
Alignment:
Q  37 agaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    ||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  19553427 agaaatattagggattgctgcattttagagggaatttgttaggttaaattg 19553377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 46883391 - 46883329
Alignment:
Q  91 ttagagggaaattataaggttaaattgttacagatctaataaaattaatagataaggatacaa 153  Q
    ||||||||||||||| ||||||| || || |||| ||||||||||||||| ||||||||||||    
T  46883391 ttagagggaaattattaggttaagttattgcagacctaataaaattaataaataaggatacaa 46883329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 9711385 - 9711335
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaatt 86  Q
    |||||||||||||  ||| |||||||||||| ||||||||||||||||||||    
T  9711385 ggagaaatattaga-attgttgcattttagatgaaatttgttaggttaaatt 9711335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 29013796 - 29013843
Alignment:
Q  40 aatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    |||||||||||||  ||||||||||||| ||||||||| |||||||||    
T  29013796 aatattagggattgctgcattttagagggaatttgttaagttaaattg 29013843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 47428297 - 47428352
Alignment:
Q  95 agggaaattataaggttaaattgttacagatctaataaaattaatagataaggata 150  Q
    ||||||| ||| |||||||||||||  |||||||| |||||||||| |||||||||    
T  47428297 agggaaaatattaggttaaattgttgtagatctaacaaaattaataaataaggata 47428352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 46883466 - 46883410
Alignment:
Q  36 gagaaatattagggatttttgcatttta--gaggaaatttgttaggttaaattgctg 90  Q
    |||||||| ||||||||  |||||||||  |||| ||||||||||||||||||||||    
T  46883466 gagaaataatagggattgctgcattttaaagaggtaatttgttaggttaaattgctg 46883410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 11928363 - 11928311
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    ||||||||||||||||||  ||||||||||||| || ||||||||||||||||    
T  11928363 ggagaaatattagggattgctgcattttagagggaaattgttaggttaaattg 11928311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 41461018 - 41460966
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    ||||||||||||||||||  ||||||||||||| |||||| ||||||||||||    
T  41461018 ggagaaatattagggattgctgcattttagagggaatttgataggttaaattg 41460966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 49484103 - 49484051
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    |||||||||||||||||| |||||| ||||||  |||||||||||||||||||    
T  49484103 ggagaaatattagggattgttgcatgttagagagaatttgttaggttaaattg 49484051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 52741033 - 52740982
Alignment:
Q  36 gagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    |||||||||||||||||  ||||||||| | |||||||||||||||||||||    
T  52741033 gagaaatattagggattgctgcattttaaatgaaatttgttaggttaaattg 52740982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 46533082 - 46533030
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    |||||||||||| ||||| | |||||||||||  |||||||||||||||||||    
T  46533082 ggagaaatattatggattgtagcattttagagataatttgttaggttaaattg 46533030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 23482588 - 23482630
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgtta 77  Q
    ||||||||||||| ||||  |||||||||||||||||||||||    
T  23482588 ggagaaatattagagattgctgcattttagaggaaatttgtta 23482630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 6537500 - 6537541
Alignment:
Q  109 gttaaattgttacagatctaataaaattaatagataaggata 150  Q
    |||||||||||||||| |||| |||||||||| |||||||||    
T  6537500 gttaaattgttacagacctaacaaaattaataaataaggata 6537541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 41462681 - 41462629
Alignment:
Q  35 ggagaaatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    ||||||||||||||||||  | ||||||||||| | |||| ||||||||||||    
T  41462681 ggagaaatattagggattgctacattttagagggagtttgataggttaaattg 41462629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 279 - 326
Alignment:
Q  40 aatattagggatttttgcattttagaggaaatttgttaggttaaattg 87  Q
    |||||||||||||  ||||||||| ||| |||||||||||||||||||    
T  279 aatattagggattgctgcattttatagggaatttgttaggttaaattg 326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University