View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_107 (Length: 227)
Name: NF13771_low_107
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_107 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 49008597 - 49008371
Alignment:
| Q |
1 |
agtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49008597 |
agtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaa |
49008498 |
T |
|
| Q |
101 |
agctaaaggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatctaatg |
200 |
Q |
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| T |
49008497 |
agctaaaggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatctaatg |
49008398 |
T |
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| Q |
201 |
gctgctgggctccaacaagggtgcatt |
227 |
Q |
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| T |
49008397 |
gctgctgggctccaacaagggtgcatt |
49008371 |
T |
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Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 44 - 216
Target Start/End: Original strand, 21686838 - 21687010
Alignment:
| Q |
44 |
atcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaaagctaaaggtgaagctggtctgtaaccattaccaatgtctgtg |
143 |
Q |
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| T |
21686838 |
atcataaacaagaccaggatcaagtgctctattagggttaatatgaccagctcccaatgcaaaaggagttgctgctctgttaccatttccaatgtctttg |
21686937 |
T |
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| Q |
144 |
atgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatctaatggctgctgggctccaac |
216 |
Q |
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| T |
21686938 |
atatgttccttagtattgtctaatatgtctgatgttgtcataattgccgacctaatagatgacgggctccaac |
21687010 |
T |
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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 44 - 215
Target Start/End: Complemental strand, 8963409 - 8963238
Alignment:
| Q |
44 |
atcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaaagctaaaggtgaagctggtctgtaaccattaccaatgtctgtg |
143 |
Q |
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|||||||||||| ||||| ||||||||| |||| || |||||||| || |||||||| || ||||||| |||| | ||| | | || ||||||||| || |
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| T |
8963409 |
atcataaacaagaccagggtcaagtgctttattagggttgatatgaccagctcccaatgcaaaaggtgttgctgctatgttatcttttccaatgtctttg |
8963310 |
T |
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| Q |
144 |
atgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatctaatggctgctgggctccaa |
215 |
Q |
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| T |
8963309 |
ataagttccttagtgttatcaaatatgtctgatgttgtcatcattgccgacctaatagctgtcgggctccaa |
8963238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 8974841 - 8974634
Alignment:
| Q |
8 |
tgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaaagctaaa |
107 |
Q |
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| T |
8974841 |
tgcacaaagaagattgacataatcttgtacaccaacatcataaacaagtccagggttaagtgctttgttggggttgatatgaccagctccttgtgcaaaa |
8974742 |
T |
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| Q |
108 |
ggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatctaatggctgctg |
207 |
Q |
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| T |
8974741 |
ggtgttgctacgttgttaccttttccaatgtcttttatgagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacctaatagctgcag |
8974642 |
T |
|
| Q |
208 |
ggctccaa |
215 |
Q |
| |
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|||||||| |
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| T |
8974641 |
ggctccaa |
8974634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 8945639 - 8945712
Alignment:
| Q |
8 |
tgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggat |
81 |
Q |
| |
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|||||| |||||||| |||||||||||| || ||||||||||||| ||||| ||||||||||||||||||| |
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| T |
8945639 |
tgcacaaagaagattaacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattgggat |
8945712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 8958431 - 8958330
Alignment:
| Q |
8 |
tgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaaagctaaa |
107 |
Q |
| |
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|||||| |||||||| |||||||||||| || ||||||||| ||| ||||| |||||||||||||| ||||| | ||| || |||||||| || ||| |
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| T |
8958431 |
tgcacaaagaagattaacataatcttgtacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatgcaaaa |
8958332 |
T |
|
| Q |
108 |
gg |
109 |
Q |
| |
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|| |
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| T |
8958331 |
gg |
8958330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 34962422 - 34962626
Alignment:
| Q |
8 |
tgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaaagctaaa |
107 |
Q |
| |
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|||||| ||||||||||||||||||||| || ||||||||||||| ||||| |||||||||||||| ||||| | ||| || |||||||| || ||| |
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| T |
34962422 |
tgcacaaagaagattcacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattaggattaacatgaccagctcccaatgcaaaa |
34962521 |
T |
|
| Q |
108 |
ggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatctaatggctgctg |
207 |
Q |
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| T |
34962522 |
ggtgttgctgctttgt---ctgttccaatgtctttgatttgttccttagaattatcaaatatgtctgatgttgtcattattgccgaccgaattgctgctg |
34962618 |
T |
|
| Q |
208 |
ggctccaa |
215 |
Q |
| |
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|||||||| |
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| T |
34962619 |
ggctccaa |
34962626 |
T |
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