View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13771_low_108 (Length: 227)
Name: NF13771_low_108
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_108 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6354261 - 6354041
Alignment:
| Q |
1 |
tttaatatagctgctggaaaaggaaaagtgggaaaggaaacatttctggaaggtcttcttacctccataccaacattgggagacaaacaaaatgctttca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6354261 |
tttaatatagctgctggaaaaggaaaagtgggaaaggaaacatttctggaaggtcttcttacctccataccaacattgggagacaaacaaaatgctttca |
6354162 |
T |
|
| Q |
101 |
gtattcattttgaatgggacagtagcatgggaattcctggagctttttacatcgataattttatgcaaggtgaattctttcctgtgagtttgacacttga |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
6354161 |
gtattcattttgaatgggacagtaacatgggaattcccggagctttttacatcgataattttatgcaaggtgaattcttccttgtgagtttgacacttga |
6354062 |
T |
|
| Q |
201 |
agatgttccaaaccatggatc |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
6354061 |
agatgttccaaaccatggatc |
6354041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 7461258 - 7461053
Alignment:
| Q |
14 |
ctggaaaaggaaaagtgggaaaggaaacatttctggaaggtcttcttacctccataccaacattgggagacaaacaaaatgctttcagtattcattttga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| ||| ||||||||||||||||||| | |
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| T |
7461258 |
ctggaaaaggaaaagtgggaaaggaaacatttctggaaggtcttcttacctccctcccaacattgggggacaagcaatctgctttcagtattcattttca |
7461159 |
T |
|
| Q |
114 |
atgggacagtagcatgggaattcctggagctttttacatcgataattttatgcaaggtgaattctttcctgtgagtttgacacttgaagatgttccaaac |
213 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||| || ||||| | |||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
7461158 |
atgggacagtaccatgggaattccaggagctttttatattgataactatatgcaaggtgaattcttccttgtgagtttgacacttgaagatgttccaaac |
7461059 |
T |
|
| Q |
214 |
catgga |
219 |
Q |
| |
|
|||||| |
|
|
| T |
7461058 |
catgga |
7461053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 6425792 - 6425588
Alignment:
| Q |
15 |
tggaaaaggaaaagtgggaaaggaaacatttctggaaggtcttcttacctccataccaacattgggagacaaacaaaatgctttcagtattcattttgaa |
114 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||| || ||||||||||||||||||| |||||||| |||||||||| |||| ||||||||||| |
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|
| T |
6425792 |
tggaaaaggaaaagtgggaaagcaaacattcttggaaggtgttattacctccataccaacattaggagacaagcaaaatgcttacagtgttcattttgaa |
6425693 |
T |
|
| Q |
115 |
tgggacagtagcatgggaattcctggagctttttacatcgataattttatgcaaggtgaattctttcctgtgagtttgacacttgaagatgttccaaacc |
214 |
Q |
| |
|
|||| |||| |||||||||||| ||||| || || || || |||||| ||||| ||| ||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
6425692 |
tggggcagtgacatgggaattccaggagcattctatattgagaattttttgcaacatgagttcttccttgtgagtttgacacttgaagatgttccaaacc |
6425593 |
T |
|
| Q |
215 |
atgga |
219 |
Q |
| |
|
||||| |
|
|
| T |
6425592 |
atgga |
6425588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 6392740 - 6392531
Alignment:
| Q |
1 |
tttaatatagctgctggaaaaggaaaagtgggaaaggaaacatttctggaaggtcttcttacctccataccaacattgggagacaaacaaaatgctttca |
100 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||| ||| |||| ||| || |||| |||||||||| |||||||||| |||||||||||||| |
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|
| T |
6392740 |
tttaacatagctactggaaaaggaaaagtgggaaaggaaacgtttatggatggttttgttacttccataccaaatttgggagacatacaaaatgctttca |
6392641 |
T |
|
| Q |
101 |
gtattcattttgaatggga---cagtagcatgggaattcctggagctttttacatcgataattttatgcaaggtgaattctttcctgtgagtttgacact |
197 |
Q |
| |
|
||||||||||||||||||| || | |||||||||||| |||||||| || | | ||||||| ||||| |||| |||| | |||||||||||| || |
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|
| T |
6392640 |
gtattcattttgaatgggatcccaatcacatgggaattccaggagctttctatgttaagaattttacgcaagatgaaatcttccttgtgagtttgaccct |
6392541 |
T |
|
| Q |
198 |
tgaagatgtt |
207 |
Q |
| |
|
|||||||||| |
|
|
| T |
6392540 |
tgaagatgtt |
6392531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 6411880 - 6411671
Alignment:
| Q |
1 |
tttaatatagctgctggaaaaggaaaagtgggaaaggaaacatttctggaaggtcttcttacctccataccaacattgggagacaaacaaaatgctttca |
100 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||| ||| |||| ||| || |||| |||||||||| |||||||||| |||||||||||||| |
|
|
| T |
6411880 |
tttaacatagctactggaaaaggaaaagtgggaaaggaaacgtttatggatggttttgttacttccataccaaatttgggagacatacaaaatgctttca |
6411781 |
T |
|
| Q |
101 |
gtattcattttgaatggga---cagtagcatgggaattcctggagctttttacatcgataattttatgcaaggtgaattctttcctgtgagtttgacact |
197 |
Q |
| |
|
||||||||||||||||||| || | |||||||||||| |||||||| || | | ||||||| ||||| |||| |||| | |||||||||||| || |
|
|
| T |
6411780 |
gtattcattttgaatgggatcccaatcacatgggaattccaggagctttctatgttaagaattttacgcaagatgaaatcttccttgtgagtttgaccct |
6411681 |
T |
|
| Q |
198 |
tgaagatgtt |
207 |
Q |
| |
|
|||||||||| |
|
|
| T |
6411680 |
tgaagatgtt |
6411671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 6365004 - 6364798
Alignment:
| Q |
16 |
ggaaaaggaaaagtgggaaaggaaacatttctggaaggtcttcttacctccataccaacattgggagacaaacaaaatgctttcagtattcattttgaat |
115 |
Q |
| |
|
|||||||| ||||||||| || |||| | ||||| | || || |||||||| | |||||||||||||| ||||||||||||||||||||| | ||||||| |
|
|
| T |
6365004 |
ggaaaaggcaaagtgggagagaaaacgtatctggcaagtgttattacctccttgccaacattgggagataaacaaaatgctttcagtattgaatttgaat |
6364905 |
T |
|
| Q |
116 |
gggacagtagcatgggaattcctggagctttttacatcgataattttatgcaa---ggtgaattctttcctgtgagtttgacacttgaagatgttccaaa |
212 |
Q |
| |
|
|||||| | |||||||| ||| ||||||||||| || || |||| | ||||| ||||||||||| | ||| || ||||| ||||||||||||||||| |
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|
| T |
6364904 |
gggacaatgacatgggaactccaggagctttttatattgagaattatctgcaaggtggtgaattcttccttgtcagcttgactcttgaagatgttccaaa |
6364805 |
T |
|
| Q |
213 |
ccatgga |
219 |
Q |
| |
|
||||||| |
|
|
| T |
6364804 |
ccatgga |
6364798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 6333689 - 6333485
Alignment:
| Q |
15 |
tggaaaaggaaaagtgggaaaggaaacatttctggaaggtcttcttacctccataccaacattgggagacaaacaaaatgctttcagtattcattttgaa |
114 |
Q |
| |
|
||||||||| ||||||||||| |||||| | | ||||||||| ||||||||||||||| ||||||| ||| ||| || | ||||||||||| |
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|
| T |
6333689 |
tggaaaaggtaaagtgggaaaaaaaacatatttagaaggtcttgttacctccataccaattttgggagcagggcaatctgcatttgatgttcattttgaa |
6333590 |
T |
|
| Q |
115 |
tgggacagtagcatgggaattcctggagctttttacatcgataattttatgcaaggtgaattctttcctgtgagtttgacacttgaagatgttccaaacc |
214 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||||| || || ||||| |||| ||| |||||||| | ||| |||||||| ||||||||| |||| | || |
|
|
| T |
6333589 |
tgggacagtgagatgggaattccaggagcattttatattgaaaatttcatgctaggagaattcttccttgtaagtttgacgcttgaagatattcccatcc |
6333490 |
T |
|
| Q |
215 |
atgga |
219 |
Q |
| |
|
||||| |
|
|
| T |
6333489 |
atgga |
6333485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 6276175 - 6276060
Alignment:
| Q |
104 |
ttcattttgaatgggacagtagcatgggaattcctggagctttttacatcgataattttatgcaaggtgaattctttcctgtgagtttgacacttgaaga |
203 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || ||||| |||| ||| |||||||||| ||| ||||| ||||||||||| |
|
|
| T |
6276175 |
ttcattttgaatgggatagtgagatgggaattccaggagcattttatattgagaatttcatgctaggagaattctttcttgtaagtttaacacttgaaga |
6276076 |
T |
|
| Q |
204 |
tgttccaaaccatgga |
219 |
Q |
| |
|
| |||| ||||||||| |
|
|
| T |
6276075 |
tattcctaaccatgga |
6276060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 6290923 - 6290808
Alignment:
| Q |
104 |
ttcattttgaatgggacagtagcatgggaattcctggagctttttacatcgataattttatgcaaggtgaattctttcctgtgagtttgacacttgaaga |
203 |
Q |
| |
|
|||||||| ||||||| ||| |||||||||||| ||||| ||||| || | ||| | |||| | |||||||||| ||| |||||||| |||||||| |
|
|
| T |
6290923 |
ttcattttaaatgggatagtgacatgggaattccaggagcattttatattaagaatcgcaagcaaagagaattctttcttgtaagtttgacccttgaaga |
6290824 |
T |
|
| Q |
204 |
tgttccaaaccatgga |
219 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
6290823 |
tgttcccaaccatgga |
6290808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 6323082 - 6323035
Alignment:
| Q |
172 |
gaattctttcctgtgagtttgacacttgaagatgttccaaaccatgga |
219 |
Q |
| |
|
|||||||| | ||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
6323082 |
gaattcttccttgtaagtttgacacttgaagatattccaaaccatgga |
6323035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 42686620 - 42686824
Alignment:
| Q |
15 |
tggaaaaggaaaagtgggaaaggaaacatttctggaaggtcttcttacctccataccaacattgggagacaaacaaaatgctttcagtattcattttgaa |
114 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||||||||||| ||||| |||| ||||||| ||||||| |||| || |||| ||||||||||||| |
|
|
| T |
42686620 |
tggaaaagggaaagttggaaaggatacatttctggaaggtattcttgcctcattaccaaccttgggagctggtgaaaacgcattcaatattcattttgaa |
42686719 |
T |
|
| Q |
115 |
tgggacagtagcatgggaattcctggagctttttacatcgataattttatgcaaggtgaattctttcctgtgagtttgacacttgaagatgttccaaacc |
214 |
Q |
| |
|
||| | | |||||||||||||| || ||||||||| | |||| |||||||| ||| || | || |||| | || ||||||||||||||||||| |
|
|
| T |
42686720 |
tggaatgatgagatgggaattcctggtgcattttacatcaagaattatatgcaagttgagttttatctcaagagtctaactcttgaagatgttccaaacc |
42686819 |
T |
|
| Q |
215 |
atgga |
219 |
Q |
| |
|
||||| |
|
|
| T |
42686820 |
atgga |
42686824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 42694891 - 42694775
Alignment:
| Q |
103 |
attcattttgaatgggacagtagcatgggaattcctggagctttttacatcgataattttatgcaaggtgaattctttcctgtgagtttgacacttgaag |
202 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||| ||||||||| | || ||||||||| ||| || || | |||||||||||| ||||||| |
|
|
| T |
42694891 |
attcattttgaatgggatgatgacatgggaattcctggagcattttacatcaagaactttatgcaaactgagtttttccttgtgagtttgactcttgaag |
42694792 |
T |
|
| Q |
203 |
atgttccaaaccatgga |
219 |
Q |
| |
|
| ||||||| |||||| |
|
|
| T |
42694791 |
acattccaaatcatgga |
42694775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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