View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_11 (Length: 581)
Name: NF13771_low_11
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 202 - 564
Target Start/End: Complemental strand, 33462221 - 33461861
Alignment:
| Q |
202 |
gtaagttttagtggttaatttatcatgattaatatgtaattgatatataaaatatttgcaggtttgataacatgttgtttaccatgcatcacatttggcc |
301 |
Q |
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| T |
33462221 |
gtaagttttagtggttaatttatcatgattaatatgtaattgatatataaaatatttgcaggtttgataacatgttgtttaccatgcatcacatttggcc |
33462122 |
T |
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| Q |
302 |
aaattgcagaagttgtggatgaaggacgtagttgtaagtacacaacattaaatacctatttttctatatatatgtactcaaaatatgtatactttgattc |
401 |
Q |
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| T |
33462121 |
aaattgcagaagttgtggatgaaggacgtagttgtaagtacacaacattaaatacctatttttctatatata--tactcaaaatatgtatactttgattc |
33462024 |
T |
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| Q |
402 |
atgatatttctaattaatgaatgcagcttgtgctatgcaaggatgtgtatacggtttactgatgaccattacatgtcattggctatactcatgtctttac |
501 |
Q |
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| T |
33462023 |
atgatattttgaattaatgaatgcagcttgtgctatgcaaggatgtgtatacggtttactgatgaccattacatgtcattggctatactcatgtctttac |
33461924 |
T |
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| Q |
502 |
agagagaaattgagagcaaagtatggtttaccagcagaaccttgttgtgattgttgtgttcat |
564 |
Q |
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| T |
33461923 |
agagagaaactgagagcaaaatatggtttaccagctgaaccatgttgtgattgttgtgttcat |
33461861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 33462437 - 33462294
Alignment:
| Q |
18 |
tgtttctattgcttcaaagtgaagttttctgctaacaactaaataagtagttataacatgaacatctttggtcgttcttccccacctaaatggtcagcta |
117 |
Q |
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| T |
33462437 |
tgtttctattgcttcaaagtgaagttttctgctaacaactaaataagtagttataacatgaacatctttggtcgttcttccccacctaaatggtcagcta |
33462338 |
T |
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| Q |
118 |
aattatgtggatgtggagaaaacccaggaacatgtaagatcaat |
161 |
Q |
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| T |
33462337 |
aattatgtggctgtggagaaaacccaggaacatgtaagatcaat |
33462294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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