View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_113 (Length: 217)
Name: NF13771_low_113
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_113 |
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| [»] scaffold0867 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 22063692 - 22063904
Alignment:
| Q |
1 |
cagttattcaaaattagttatcagaatatccaaagtgattataatgttaatgacttgtgccgttgtttgttgccattatatcttttagagaagaacgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| |
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| T |
22063692 |
cagttattcaaaattagttatcagaatatccaaagtgattataatgttaatgacttgtgccgatgtttgttgccattataccttttggagaagaacgata |
22063791 |
T |
|
| Q |
101 |
cactattattgaccagaaatggtattttttcaagacaaccaattctctataatttgagagataacagagcaaaaaggatcaatataccttggcggcacag |
200 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22063792 |
cactattattgaccagaaattatattttttcaagagaaccaattctctataatttgagagataacagagcaaaaaggatcaatataccttggtggcacaa |
22063891 |
T |
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| Q |
201 |
ttgtcagaattat |
213 |
Q |
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||||||||||||| |
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| T |
22063892 |
ttgtcagaattat |
22063904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 22100543 - 22100755
Alignment:
| Q |
1 |
cagttattcaaaattagttatcagaatatccaaagtgattataatgttaatgacttgtgccgttgtttgttgccattatatcttttagagaagaacgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
22100543 |
cagttattcaaaattagttatcagaatatccaaagtgattatcactttgatgacttgtgccgttgtttgttgccattatgccttttggagaagaacgata |
22100642 |
T |
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| Q |
101 |
cactattattgaccagaaatggtattttttcaagacaaccaattctctataatttgagagataacagagcaaaaaggatcaatataccttggcggcacag |
200 |
Q |
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| T |
22100643 |
aactattattgaccataaatgatttgcttcaaagacgaccaattctctataatttgagagataatagaggacaaatgatcaatataccttggtggtccaa |
22100742 |
T |
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| Q |
201 |
ttgtcagaattat |
213 |
Q |
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| ||||||||||| |
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| T |
22100743 |
tggtcagaattat |
22100755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 22070163 - 22070346
Alignment:
| Q |
3 |
gttattcaaaattagttatcagaatatccaaagtgattataatgttaatgacttgtgccgttgtttgttgccattatatcttttagagaagaacgataca |
102 |
Q |
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||||||||||||||||||| ||||| |||||| |||| | |||||||||| ||| ||||||||||||| ||||| |||||||| |||||| |
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| T |
22070163 |
gttattcaaaattagttataagaatctccaaatagattgtccctttaatgacttttgc------ttgttgccattatgccttttggagaagaaggataca |
22070256 |
T |
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| Q |
103 |
ctattattgaccagaaatggtattttttcaagacaaccaattctctataatttgagagataacagagcaaaaaggatcaatataccttgg |
192 |
Q |
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||||||||||| ||||||| | ||||| ||||| ||||||||||||||||||| ||||||| | ||||||||||||| ||||||||||| |
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| T |
22070257 |
ctattattgacaagaaatgatttttttgaaagacgaccaattctctataatttgcgagataagatagcaaaaaggatccatataccttgg |
22070346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 22080920 - 22081103
Alignment:
| Q |
3 |
gttattcaaaattagttatcagaatatccaaagtgattataatgttaatgacttgtgccgttgtttgttgccattatatcttttagagaagaacgataca |
102 |
Q |
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||||||||||||||||||||||||| |||||| ||| || ||||| |||||||| ||||||||||||| ||||| |||||||| |||||| |
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| T |
22080920 |
gttattcaaaattagttatcagaatctccaaatagatcatccctttaattacttgtgc------ttgttgccattatgccttttggagaagaaggataca |
22081013 |
T |
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| Q |
103 |
ctattattgaccagaaatggtattttttcaagacaaccaattctctataatttgagagataacagagcaaaaaggatcaatataccttgg |
192 |
Q |
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|| ||||||| ||||||| | || || ||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
22081014 |
ctgttattgatgagaaatgattttgttgaaagacgaccaattctctataatttgagagataagagagcaaaaaagatcaatataccttgg |
22081103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0867 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0867
Description:
Target: scaffold0867; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 4689 - 4477
Alignment:
| Q |
1 |
cagttattcaaaattagttatcagaatatccaaagtgattataatgttaatgacttgtgccgttgtttgttgccattatatcttttagagaagaacgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
4689 |
cagttattcaaaattagttatcagaatatccaaagtgattatcactttgatgacttgtgccgttgtttgttgccattatgccttttggagaagaacgata |
4590 |
T |
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| Q |
101 |
cactattattgaccagaaatggtattttttcaagacaaccaattctctataatttgagagataacagagcaaaaaggatcaatataccttggcggcacag |
200 |
Q |
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|||||||||||||| ||||| | | || ||||| ||||||||||||||||||||||||||| |||| | ||| |||||||||||||||| || || |
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| T |
4589 |
aactattattgaccataaatgatttgcttcaaagacgaccaattctctataatttgagagataatagaggacaaatgatcaatataccttggtggtccaa |
4490 |
T |
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| Q |
201 |
ttgtcagaattat |
213 |
Q |
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| T |
4489 |
tggtcagaattat |
4477 |
T |
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