View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_13 (Length: 557)
Name: NF13771_low_13
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 166 - 547
Target Start/End: Original strand, 11230899 - 11231280
Alignment:
| Q |
166 |
ataacagcaacaatcacacaaacatacattgtatgttggtctaagactaatgtgaaattattggttaatgcaccattacaacaaaccagtgtgatcccgt |
265 |
Q |
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| T |
11230899 |
ataacagcaacaatcacacaaacatacattgtatgttggtctaagactaatgtgaaattattggttaatgcaccattacaacaaaccagtgtgatcccgt |
11230998 |
T |
|
| Q |
266 |
gctaagcaacgtaaccagttgtgccattttgaaaacatccttcatctactttgatccttgtcgtgccaatgttcggctgctccaagatttctggctctaa |
365 |
Q |
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| T |
11230999 |
gctaagcaacctaaccagttgtgccattttgaaaacatccttcatctactttgatccttgttgtgccaatgttcggctgctccaagatttctggctctga |
11231098 |
T |
|
| Q |
366 |
aactatggttggcttcagctttgagggattagcgttaaaaaactctgcagaaaatctggattcctccatagcgatggacacaacagaaaggtgttttgtt |
465 |
Q |
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| T |
11231099 |
aactatggttggcttcggctttgagggattagcgttaaaaaactctgcggaaaatctggattcctccatagcgatggacacaccagaaaggtgttttgtt |
11231198 |
T |
|
| Q |
466 |
aaaaatcaattggttccaacccttccaaataaaccacaatgtgacactgaataaatggctagccatggtatccgggtctgtg |
547 |
Q |
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| T |
11231199 |
aaaaatcaattggttccaacccttccaaataaaccacaatgtaacaccgaataaatggctagccatggtatccgagtctgtg |
11231280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 11230322 - 11230490
Alignment:
| Q |
1 |
ccaaccaatcgatacatgtcgtagcagagacggggaatcactcctaagcaaccaccgttggatataggaatccatacatgaccttgttttgttgaaatta |
100 |
Q |
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| T |
11230322 |
ccaaccaatcgatacatgtcgtagcagagacggggaatcactcctaagcaaccatcgttggatataggaatccatacatgaccttgttttgttgaaatta |
11230421 |
T |
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| Q |
101 |
tcagaaaaataaatggacaatgcttttccaacatgcttggttcgaaacttggacttggtgcgtgaataa |
169 |
Q |
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| T |
11230422 |
tcagaaaaataaatggataatgcttttccaacatgcttggttcgaaacttggacttggtgcgtgaataa |
11230490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 166 - 372
Target Start/End: Original strand, 11243086 - 11243292
Alignment:
| Q |
166 |
ataacagcaacaatcacacaaacatacattgtatgttggtctaagactaatgtgaaattattggttaatgcaccattacaacaaaccagtgtgatcccgt |
265 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||| ||||||||| | |||| ||||||| |||| |||||||||||| |||||||||||||| |
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| T |
11243086 |
ataacagcaccaatcacacaaagatacattgtatgttggtctgagactaatgcggaatttttggttactgcagcattacaacaaaacagtgtgatcccgt |
11243185 |
T |
|
| Q |
266 |
gctaagcaacgtaaccagttgtgccattttgaaaacatccttcatctactttgatccttgtcgtgccaatgttcggctgctccaagatttctggctctaa |
365 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||| || ||| || |||||||| |||||||| |||| |||||||||||||| | |
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| T |
11243186 |
gctaagcaacctaaccagttgtgccattttgaaaacatcctgcatctatgttaatctctgccgtgccaacgttcggctactcccagatttctggctctga |
11243285 |
T |
|
| Q |
366 |
aactatg |
372 |
Q |
| |
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||||||| |
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| T |
11243286 |
aactatg |
11243292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 530
Target Start/End: Original strand, 12919278 - 12919532
Alignment:
| Q |
278 |
aaccagttgtgccattttgaaaacatccttcatctactttgatccttgtcgtgccaatgttcggctgctccaagatttctggctctaaaactatggttgg |
377 |
Q |
| |
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|||||||||| ||| ||||||| |||||| ||||||| |||||| |||| ||||||| ||||| |||||| || ||||| | ||| ||||| || | |
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| T |
12919278 |
aaccagttgtaccagtttgaaagcatcctgcatctacattgatctttgttgtgccaacattcggttgctcccagctttctagttctgaaactctgacaga |
12919377 |
T |
|
| Q |
378 |
cttcagctttgagggattagcgttaaaaaactctgcagaaaatctggattcctccatagcgatggacaca--acagaaaggtgttttgttaaaaatcaat |
475 |
Q |
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||||| ||| | |||||||| ||||||| ||||||||||| ||||| ||| | || | || ||| |||||||| |||||| || ||||||||| |
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| T |
12919378 |
cttcatcttcaacggattagcaataaaaaattctgcagaaaaattggatatttccttcgcagtagatacaggacagaaagttgttttattgaaaatcaat |
12919477 |
T |
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| Q |
476 |
tggttccaacccttccaaataaaccacaatgtgacactgaataaatggctagcca |
530 |
Q |
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||||||| |||||||||||| ||| ||| ||| |||||| ||||||| ||||||| |
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| T |
12919478 |
tggttccgacccttccaaatcaacgacagtgtaacactggataaatgactagcca |
12919532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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