View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_14 (Length: 552)
Name: NF13771_low_14
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 108 - 481
Target Start/End: Original strand, 3423250 - 3423624
Alignment:
| Q |
108 |
catgtcattctattattcaattcaaaccnnnnnnnccttagaaaatttattcaattcaaactcaagtgtcttacattatt-acttatctggttttaaggt |
206 |
Q |
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| T |
3423250 |
catgtcattctattattcaattcaaacctttttttccttagaaaatttattcaattcaaactcaagtgtcttacattatttacttatctggttttaaggt |
3423349 |
T |
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| Q |
207 |
cagtatgttttttaccttcacgttatacataatgaaattttaacttccatggaagctatatcatggatcgaatgctagtgctagataaaattgcatagga |
306 |
Q |
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| T |
3423350 |
cagtatgttttttaccttcacgttatacataatgaaattttaacttccatgaaagctatatcatggatcgaatgctagtgctagataaaattgcatagga |
3423449 |
T |
|
| Q |
307 |
tatcgtatcatatttgttatgtgataattcaatcttggttaaagtttattagttaactaacttggagagttagttgagttagtttctaactgttatgtgg |
406 |
Q |
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| T |
3423450 |
tatcgtatcatatttgttatgtgataattcaatcttggttaaagtttattagttaactaacttggagagttagttgagttagtttctaactgttatgtgg |
3423549 |
T |
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| Q |
407 |
atttcaagtaacaggttggttaagacttattagttgatatacttgctatccaagcaagctaaatggttgtaattc |
481 |
Q |
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| T |
3423550 |
atttcaagtaacaggttggttaagacttattagttgatatacttgctatacaagcaagctaaatgagtgtaattc |
3423624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 3423159 - 3423211
Alignment:
| Q |
17 |
atttcagaattccaaaattttatattatatatatgagaaaaacaagtaatagg |
69 |
Q |
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| T |
3423159 |
atttcagaattccaaaattttatattatatatatgagaaaaacaagtaatagg |
3423211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 412 - 487
Target Start/End: Complemental strand, 109345 - 109270
Alignment:
| Q |
412 |
aagtaacaggttggttaagacttattagttgatatacttgctatccaagcaagctaaatggttgtaattcattgta |
487 |
Q |
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|||||||| |||| |||||| || |||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
109345 |
aagtaacatgttgattaagatttgttagttgatatacttgctatataagcaagttaaatggttgtaattcattgta |
109270 |
T |
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