View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_16 (Length: 511)
Name: NF13771_low_16
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 16 - 503
Target Start/End: Complemental strand, 48023559 - 48023072
Alignment:
| Q |
16 |
cagcccaaagcttaacttttagaatagaattgacaaggggcttcattcatgtccactcttgggaaattgttgcattgcaactaattctaatcaatctaga |
115 |
Q |
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| T |
48023559 |
cagcccaaagcttaacttttagaatagaattgacaaggggcttcattcatgtctactcttgggaaattgttgcattgcaactaattctaatcaatctaga |
48023460 |
T |
|
| Q |
116 |
caaggagcttccacacaatatgttcttgctctacttgtacctgaatctgaataagacacagtgatgaccggttcatactccttttttgtagcctaaatct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48023459 |
caaggagcttccacacaatatgttcttgctctacttgtacctgaatctgaataagacacagtgatgaccggttcatactccttttttgtagcctaaatct |
48023360 |
T |
|
| Q |
216 |
caccgaccaatttctcaatttagaatggccacaaacagctccgcccaaggaccataaaacatatcaagctcaatgttcaacaggttttgagccagccaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48023359 |
caccgaccaatttctcaatttagaatggccacaaacagctccgcccaaggaccataaaacatatcaagctcaatgttcaacaggttttgagccagccaac |
48023260 |
T |
|
| Q |
316 |
ctttgctatcatttaagaggaaannnnnnncatgttgtagatatattgaaatgcaaccaaacaacttttacattcctgcagcccctaaacacattgagat |
415 |
Q |
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||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48023259 |
ctttgctatcatttaagtggaaatttttttcgtgttgtagatatattgaaatgcaaccaaacaacttttacattcctgcagcccctaaacacattgagat |
48023160 |
T |
|
| Q |
416 |
cattttaagcagattacttgcagatgggatgaatctcatcaggtcatgccacacttctttctggcataatttgtcatcaatagtcttc |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48023159 |
cattttaagcagattacttgcagatgggatgaatctcatcaggtcatgccacacttctttctggcataatttgtcatcaatattcttc |
48023072 |
T |
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