View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_17 (Length: 504)
Name: NF13771_low_17
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_17 |
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| [»] scaffold0753 (1 HSPs) |
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| [»] scaffold0135 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 17 - 499
Target Start/End: Complemental strand, 9134368 - 9133887
Alignment:
| Q |
17 |
aaatataaacaatttctccttcttctctctctaatttcttgctctcaattttggagtctgaccctactcgaattcaatcgtattacattaattacttaga |
116 |
Q |
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| T |
9134368 |
aaatataaacaatttctccttcttctctctctaatttcttgctcacaattttggagtctgaccctactcgaattcaatcgtattacattaattacttaga |
9134269 |
T |
|
| Q |
117 |
tgcatttcatttaatatgagccaaacattcaactgttgatgaataaaccaatggttgatgttacatgtatacacacatcaaagcatggatatgttggcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9134268 |
tgcatttcatttaatatgagccaaacattcaactgttgatgaataaaccaatggttgatgttacatgtatacacacatcaaagcatggatatgttggcaa |
9134169 |
T |
|
| Q |
217 |
aatgtttacattggattagttggacaatgtcatgtattctgttgtttcatactcagctttgtaacaattcaaactaaatagcttccttgtttacttactt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
9134168 |
aatgtttacattggattagttggacaatgtcatgtattctgttgtttcatactcagttttgtaacaattcaaactaaatagcttccttgttta----ctt |
9134073 |
T |
|
| Q |
317 |
attgaatgtttgtgacatatttacattttcacattgtagttacaatgcaagcccaagaggaggtacctcct---atgcaatgcaaagatacttttgtcat |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
9134072 |
attgaatgtttgtgacatatttacattttcacattgtagttacaatgcaagcccaagaggaggcacctcctgacatgcaatgcaaagatacttttgtcat |
9133973 |
T |
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| Q |
414 |
tcaacgcgtgtttgcaaggcctggaaaaatcatgaaagatgtcactccagaaatggtaaccgcatatttaagtattatctacccac |
499 |
Q |
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| T |
9133972 |
tcaacgcgtgtttgcaaggcctggaaaaatcatgaaagatgtcactccagaaatggtaaccgcatatttaagtattttcttcccac |
9133887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 474
Target Start/End: Complemental strand, 9309153 - 9309014
Alignment:
| Q |
338 |
tacattttcacattgtagttacaatgcaagcccaagaggaggtacctcct---atgcaatgcaaagatacttttgtcattcaacgcgtgtttgcaaggcc |
434 |
Q |
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||||||||||| |||||||||||||||||| |||| |||||| ||||||| |||||||||||||||| ||| || |||| |||| ||||||| || |
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| T |
9309153 |
tacattttcactttgtagttacaatgcaaggccaaaaggaggcacctcctgacatgcaatgcaaagataagtttctccttcagagcgtagttgcaagccc |
9309054 |
T |
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| Q |
435 |
tggaaaaatcatgaaagatgtcactccagaaatggtaacc |
474 |
Q |
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| T |
9309053 |
tggagcaacggcaaaagatatcactccagaaatggtaacc |
9309014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 271
Target Start/End: Original strand, 9257446 - 9257518
Alignment:
| Q |
200 |
catggatatgttggcaaaatgtttacattgga-ttagttggacaatgtcatgtattctgttgtttcatactca |
271 |
Q |
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| T |
9257446 |
catggatatgttggcataatgtttacatgggatttagttgcacaatgtcatgtgttctgttcttttatactca |
9257518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 388
Target Start/End: Original strand, 9156199 - 9156255
Alignment:
| Q |
332 |
catatttacattttcacattgtagttacaatgcaagcccaagaggaggtacctccta |
388 |
Q |
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| T |
9156199 |
catatttacattttcactttgtagttacaatgcaagctcaaaagaaggcacctccta |
9156255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 438
Target Start/End: Complemental strand, 9168280 - 9168192
Alignment:
| Q |
353 |
tagttacaatgcaagcccaagaggaggtacctcct---atgcaatgcaaagatacttttgtcattcaacgcgtgtttgcaaggcctgga |
438 |
Q |
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| T |
9168280 |
tagttacaatgcaagccctagaggaggcacctcctgacatgcaatgcaaagataagtttctccttcaaagcatagttgcaaggcctgga |
9168192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 438
Target Start/End: Original strand, 9257563 - 9257651
Alignment:
| Q |
353 |
tagttacaatgcaagcccaagaggaggtacctcct---atgcaatgcaaagatacttttgtcattcaacgcgtgtttgcaaggcctgga |
438 |
Q |
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| T |
9257563 |
tagttacaatgcaagccctagaggaggcacctcctgacatgcaatgcaaagataagtttctccttcaaagcatagttgcaaggcctgga |
9257651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 403
Target Start/End: Original strand, 9300539 - 9300613
Alignment:
| Q |
332 |
catatttacattttcacattgtagttacaatgcaagcccaagaggaggtacctcct---atgcaatgcaaagata |
403 |
Q |
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||||||||||||||||| ||| |||||||||||||| | || |||||| ||||||| ||||||||||| |||| |
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| T |
9300539 |
catatttacattttcactttgcagttacaatgcaaggctaaaaggaggcacctcctgacatgcaatgcaatgata |
9300613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 388
Target Start/End: Original strand, 9194573 - 9194629
Alignment:
| Q |
332 |
catatttacattttcacattgtagttacaatgcaagcccaagaggaggtacctccta |
388 |
Q |
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| T |
9194573 |
catatttacattttcacttggaagttacaatgcaagctcaaaagaaggcacctccta |
9194629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 9232357 - 9232421
Alignment:
| Q |
207 |
atgttggcaaaatgtttacattggattagttggacaatgtcatgtattctgttgtttcatactca |
271 |
Q |
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| T |
9232357 |
atgttgacataatgtttacatgtgatttgttgtacaatgtcatgtagtatgttctttcatactca |
9232421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0753 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0753
Description:
Target: scaffold0753; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 364
Target Start/End: Original strand, 5911 - 5957
Alignment:
| Q |
318 |
ttgaatgtttgtgacatatttacattttcacattgtagttacaatgc |
364 |
Q |
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|||| |||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
5911 |
ttgactgtttgtgtcatatttacattttcacattgcagttacaatgc |
5957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 38223 - 38287
Alignment:
| Q |
207 |
atgttggcaaaatgtttacattggattagttggacaatgtcatgtattctgttgtttcatactca |
271 |
Q |
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|||||| || ||||||||||| |||| |||| ||||||||||||| | |||| ||||||||||| |
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| T |
38223 |
atgttgacataatgtttacatgtgatttgttgtacaatgtcatgtagtatgttctttcatactca |
38287 |
T |
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