View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_2 (Length: 723)
Name: NF13771_low_2
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 17 - 627
Target Start/End: Complemental strand, 23362344 - 23361733
Alignment:
| Q |
17 |
cacttacaacgaatttgacaaataaaccactccaattttgtaagaactctactctagacgttcaacaacaattattttaacaaattcatcgcgatatcaa |
116 |
Q |
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| T |
23362344 |
cacttacaacgaatttgacaaataaaccactccaattttgtaagaactctactctagacgttcaacaacaattattttaacaaattcatcgcgatatcaa |
23362245 |
T |
|
| Q |
117 |
acatgcacacatcggtgtaaacaaattttgcaagnnnnnnn-gtgtttaattcattatgacacatacctatctgcattgtaagaagaggacctcttgaaa |
215 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23362244 |
acatgcacacatcagtgtaaacaaattttgcaagaaaaaaaagtgtttaattcattatgacacatacctatctgcattgtaagaagaggacctcttgaaa |
23362145 |
T |
|
| Q |
216 |
ggaggagcttcaacttttttggtttcgatcaaactcccactgaagtactctttatcttccaatcttaccctattcaaatccggaatttccaccaatgtcc |
315 |
Q |
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| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23362144 |
gcaggagcttcaacttttttggtttcaatcaaactcccactgaagtactctttatcttccaatcttaccctattcaaatccggaatttccaccaatgtcc |
23362045 |
T |
|
| Q |
316 |
ccacttcttttcccacatgattccctcctccgcggggtagtctagacttatagtgcccaaccaacgagaaccgttgatctttaccagaactggccccact |
415 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23362044 |
ccacttcttttcccacatgatttcctcctccccggggtagtctagacttatagtgcccaaccaacgagaaccgttgatctttaccagaactggccccact |
23361945 |
T |
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| Q |
416 |
cccttccttgaaagacactgcaccgcacgataacaactgcaacagtactgatgaagctctcatccttccacttggacaactctcaaccgttggattctct |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23361944 |
cccttccttgaaagacactgcaccgcacgataacaactgcaacagtaccgatgaagctctcatccttccacttggacaactctcaaccgttggattctct |
23361845 |
T |
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| Q |
516 |
ttaggaacagatcgtaatcccagccgtccatctactttcattaatgttcccagtgtttctggacttgaatctgacggcggaggtgaaatctcttccctgc |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23361844 |
ttaggaacagatcgtaatcccagccgtccatctactttcattaatgttcccagtgtttctggacttgaatctgacggcggaggtgaaatctcttccctgc |
23361745 |
T |
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| Q |
616 |
ttagctccgtac |
627 |
Q |
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|||||||||||| |
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| T |
23361744 |
ttagctccgtac |
23361733 |
T |
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