View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13771_low_22 (Length: 450)

Name: NF13771_low_22
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13771_low_22
NF13771_low_22
[»] chr5 (2 HSPs)
chr5 (11-287)||(41345575-41345851)
chr5 (354-390)||(41345478-41345514)
[»] chr7 (1 HSPs)
chr7 (23-67)||(9483384-9483428)
[»] chr8 (2 HSPs)
chr8 (37-80)||(15140368-15140411)
chr8 (29-81)||(30918778-30918830)
[»] chr4 (1 HSPs)
chr4 (22-64)||(35212745-35212787)
[»] chr3 (1 HSPs)
chr3 (23-81)||(7563199-7563257)
[»] chr2 (2 HSPs)
chr2 (15-81)||(33498620-33498686)
chr2 (31-83)||(9994743-9994795)
[»] chr6 (2 HSPs)
chr6 (28-69)||(6916737-6916778)
chr6 (31-63)||(33501985-33502017)
[»] chr1 (1 HSPs)
chr1 (27-63)||(46873779-46873815)


Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 287
Target Start/End: Complemental strand, 41345851 - 41345575
Alignment:
Q  11 cacagacaagtcgacaccaataatagtttgagaaaattgactaattgaatgtaaccacacgagtcggtgttgtatcaaacacaaacacgtgttggacacc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| | |    
T  41345851 cacagacaagtcgacaccaataatagtttgagaaaattgactaattgaatgtaaccacacgagtcagtgttgtatcaaacactaacacgtgttggataac 41345752  T
Q  111 aaatacacctacaatataaagtgtctatgctatatagttcaatttcaccccttaaaattaaaactaccaagcaaaactttttcaagcatatacctggaac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41345751 aaatacacctacaatataaagtgtctatgctatatagttcaatttcaccccttaaaattaaaactaccaagcaaaactttttcaagcatatacctggaac 41345652  T
Q  211 tgtctttgacttcaatctcttgtctttggcattaagatcagtaggctcagcaaatccgtcctagtacaacacaagtt 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41345651 tgtctttgacttcaatctcttgtctttggcattaagatcagtaggctcagcaaatccgtcctagtacaacacaagtt 41345575  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 41345514 - 41345478
Alignment:
Q  354 ggaaccatttaattctccaattcaaacaaaatttcac 390  Q
    |||||||||||||||||||||||||||| ||||||||    
T  41345514 ggaaccatttaattctccaattcaaacacaatttcac 41345478  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 9483384 - 9483428
Alignment:
Q  23 gacaccaataatagtttgagaaaattgactaattgaatgtaacca 67  Q
    ||||||||||||| ||||||||||| || ||||||||||||||||    
T  9483384 gacaccaataataatttgagaaaatagaataattgaatgtaacca 9483428  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 15140411 - 15140368
Alignment:
Q  37 tttgagaaaattgactaattgaatgtaaccacacgagtcggtgt 80  Q
    ||||||||| |||| |||||||||||||||||||| ||||||||    
T  15140411 tttgagaaatttgaataattgaatgtaaccacacgtgtcggtgt 15140368  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 30918830 - 30918778
Alignment:
Q  29 aataatagtttgagaaaattgactaattgaatgtaaccacacgagtcggtgtt 81  Q
    ||||||| ||| ||||| |||| |||||||||||||||||| | |||||||||    
T  30918830 aataataattttagaaagttgaataattgaatgtaaccacatgtgtcggtgtt 30918778  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 35212787 - 35212745
Alignment:
Q  22 cgacaccaataatagtttgagaaaattgactaattgaatgtaa 64  Q
    |||||||||||||| |||||||||||| | |||||||||||||    
T  35212787 cgacaccaataataatttgagaaaattaaataattgaatgtaa 35212745  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 7563257 - 7563199
Alignment:
Q  23 gacaccaataatagtttgagaaaattgactaattgaatgtaaccacacgagtcggtgtt 81  Q
    ||||||||||||| |||||||| || || |||||||||||| | ||||| |||||||||    
T  7563257 gacaccaataataatttgagaatatggaataattgaatgtatctacacgtgtcggtgtt 7563199  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 33498620 - 33498686
Alignment:
Q  15 gacaagtcgacaccaataatagtttgagaaaattgactaattgaatgtaaccacacgagtcggtgtt 81  Q
    |||| |||||||| | ||||| ||||||||||| || |||||||||||||||  ||| |||||||||    
T  33498620 gacacgtcgacacaagtaataatttgagaaaatggaataattgaatgtaacctgacgtgtcggtgtt 33498686  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 9994743 - 9994795
Alignment:
Q  31 taatagtttgagaaaattgactaattgaatgtaaccacacgagtcggtgttgt 83  Q
    |||||||||||||||||| | || |||||||| |||||| | |||||||||||    
T  9994743 taatagtttgagaaaattaaatagttgaatgtgaccacatgcgtcggtgttgt 9994795  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 6916737 - 6916778
Alignment:
Q  28 caataatagtttgagaaaattgactaattgaatgtaaccaca 69  Q
    |||||| | |||||||||||||| ||||||||||||||||||    
T  6916737 caataacaatttgagaaaattgaataattgaatgtaaccaca 6916778  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 33502017 - 33501985
Alignment:
Q  31 taatagtttgagaaaattgactaattgaatgta 63  Q
    |||||||||||||||||||| ||||||||||||    
T  33502017 taatagtttgagaaaattgaataattgaatgta 33501985  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 46873779 - 46873815
Alignment:
Q  27 ccaataatagtttgagaaaattgactaattgaatgta 63  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  46873779 ccaataatagtttgataaaatggactaattgaatgta 46873815  T

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