View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_26 (Length: 431)
Name: NF13771_low_26
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 10 - 415
Target Start/End: Original strand, 24436906 - 24437311
Alignment:
| Q |
10 |
attattctatagtcataacctcttctcaaatttaacattttgnnnnnnngaatagagaaatgggtcgcattccatgctgtgagaaggacaatgtgaagag |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24436906 |
attattctatagtcataacctcttctcaaatttaacattttgaaaaaaagaatagagaaatgggtcgcattccatgctgtgagaaggacaatgtgaagag |
24437005 |
T |
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| Q |
110 |
aggtcagtggacacctgaggaagacaacaagctctcctcttacattgctcaacatggcacccgcaactggcgcctcattccaaagaatgctggttagtcc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24437006 |
aggtcagtggacacctgaggaagacaacaagctctcctcttacattgctcaacatggcacccgcaactggcgcctcattccaaagaatgctggttagtcc |
24437105 |
T |
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| Q |
210 |
ttctccctgttcgtataaatataatctgaatcaatgtcgataaaactaactttaatacttgatttttgtggattaaaataaataggtcttcagagatgtg |
309 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24437106 |
ttctccctattcgtataaatataatctgaatcaatgtcaataaaactaactttaatacttgatttttgtggattaaaataaataggtcttcagagatgtg |
24437205 |
T |
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| Q |
310 |
gaaagagctgcaggctaaggtggactaattaccttcgccctgatctgaaacatggccatttctcggatggagaagagcaaacaattgtgaagcttcattc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24437206 |
gaaagagctgcaggctaaggtggactaattaccttcgccctgatctgaaacatggccatttctcggatggagaagagcaaacaattgtgaagcttcattc |
24437305 |
T |
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| Q |
410 |
agtttt |
415 |
Q |
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|||||| |
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| T |
24437306 |
agtttt |
24437311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 31999890 - 31999949
Alignment:
| Q |
287 |
ataaataggtcttcagagatgtggaaagagctgcaggctaaggtggactaattaccttcg |
346 |
Q |
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| T |
31999890 |
ataaaaagggcttcaaagatgtggaaagagctgcagactaagatggactaactaccttcg |
31999949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 31939608 - 31939648
Alignment:
| Q |
303 |
agatgtggaaagagctgcaggctaaggtggactaattacct |
343 |
Q |
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|||||||||||||||||||| ||||| |||||||| ||||| |
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| T |
31939608 |
agatgtggaaagagctgcagactaagatggactaactacct |
31939648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 45437994 - 45438044
Alignment:
| Q |
291 |
ataggtcttcagagatgtggaaagagctgcaggctaaggtggactaattac |
341 |
Q |
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||||||||||| |||||||| |||||||| ||||| ||||||| ||||||| |
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| T |
45437994 |
ataggtcttcaaagatgtggtaagagctgtaggcttaggtggattaattac |
45438044 |
T |
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