View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_30 (Length: 413)
Name: NF13771_low_30
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 47 - 401
Target Start/End: Original strand, 1877191 - 1877548
Alignment:
| Q |
47 |
atagcttatcttccacttagttagattactctagacttctgttcatccacttcaataggataaaaatattnnnnnnnnt----------ccttgaaaatc |
136 |
Q |
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| T |
1877191 |
atagcttatcttccacttaattagattactctagacttctgttcatccacttcaataggataaaaaaaataaaaaaaataaaaaaaaatccttgaaaatc |
1877290 |
T |
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| Q |
137 |
ttcaacacatgaaaaaagaagcatttagaaatatatggaccaaccacttataggactataggagacgtatcaaatggttttttcttctaatcattcttca |
236 |
Q |
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| T |
1877291 |
ttcaacacatgaaaaaagaagcatttagaaatatatggaccaaccacttataggactataggagacgtatcaaatggttttttcttctaatcattcttca |
1877390 |
T |
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| Q |
237 |
tgctagattcatgcccattgcccaagcattataggtttttaattcaaaagctttccctctatgtgttacacaaagggcaagaaggtgaaagtgattaaaa |
336 |
Q |
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| T |
1877391 |
tgctagattcatgcc-------caagcattataggtttttaattcaaaagctttccctctatgtgttacacaaagggcaagaagttgaaagggattaaaa |
1877483 |
T |
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| Q |
337 |
tatttcaaacactgttgagtctataagttgactgctatgttcccacaaggcattactattaccta |
401 |
Q |
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| T |
1877484 |
tatttcaaacactgttgagtctataagttgactgctatgttcccacaaggcattactattaccta |
1877548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 1877133 - 1877163
Alignment:
| Q |
18 |
aattcatatatagaatatggtttgaatgaat |
48 |
Q |
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| T |
1877133 |
aattcatatatagaatatggtttgaatgaat |
1877163 |
T |
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