View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_31 (Length: 410)
Name: NF13771_low_31
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 189 - 396
Target Start/End: Complemental strand, 28996706 - 28996491
Alignment:
| Q |
189 |
ggacccataattccaactgctatggta--------aaacaccccacgttgtttaggaatcaaggtcaatagtagtttatataaaatatgtactcctcaat |
280 |
Q |
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| T |
28996706 |
ggacccataattccaactgctatggtatacaactaaaacaccccacgttgtttaggaatcaaggtcaatagtaatttatataaaatgtgtactcctcaat |
28996607 |
T |
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| Q |
281 |
gcaacaagaccttttataaaggacaaagttgaaaagggcatacacctcaaagcagaaaatacctcagaacaagatgtgacttactttgaagttggaacgg |
380 |
Q |
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| T |
28996606 |
gcaacaagaccttttataaaagacaaagttgaaaagggcatacacctcaaagcagaaaatacctcagaacaaggtgtgacttactttgaagttgaaacga |
28996507 |
T |
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| Q |
381 |
aaaaccttcttatttc |
396 |
Q |
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||||||| |||||||| |
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| T |
28996506 |
aaaacctccttatttc |
28996491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 28998108 - 28997922
Alignment:
| Q |
17 |
aatttaagggtggtaagttacgaataaaggtgattttattgcttttgatatccattgttgtttcttaaagtatgacccaagattttattttgcattaatt |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28998108 |
aatttaagggtggtaagttaggaataaaggtgattttattgcttttgatatccattgttgtttcttaaagtatgacccaagattttattttgcactaatt |
28998009 |
T |
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| Q |
117 |
cgattaaccaccagttcacaaa--------gcaaacattataaaacccgaagagatatttgatatgttagttgcggattcggaccca |
195 |
Q |
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| T |
28998008 |
cgatcaaccattagttcacaaagcaaccaagcaaccattataaaacccgaagagatatttgatatgttagtcgcgggtttggaccca |
28997922 |
T |
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