View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_32 (Length: 409)
Name: NF13771_low_32
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 31455079 - 31455454
Alignment:
| Q |
17 |
cacttttacactatcaaaatgggaagctagtggaagattcattaagtggttcagttacacttttagatgcatgtagttcatcaagggaattactcttgaa |
116 |
Q |
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| T |
31455079 |
cacttttacactatcaaaatgggaagctagtggaagattcattaagtggttcagttacacttttagatgcatgtggttcatcaagggaattactcttgaa |
31455178 |
T |
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| Q |
117 |
tctcaaggaacatgtggaaacacttcaatccgctatacgtagaagacgaggaaattcaacttcaagcattgaaagcagcatatatgagtatgattgcttt |
216 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31455179 |
tctcaaggaacatgtggaaacacttcaatcggctatacgtagaagacgaggaaattcaacttcaagcattgaaagcagcatatatgagtatgattgcttt |
31455278 |
T |
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| Q |
217 |
agaaagaaggcaaagaaggaaatttctaagcaacttagtgaaatgaagaaaatggaaaacaaagtaaagcttttttctattatgggacaagatcaaaatt |
316 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31455279 |
agaaagaaggcaaagaaggaaatttcaaagcaacttggtgaaatgaagaaaatggaaaacaaagtaaagcttttttctattatgggccaagatcaaaatt |
31455378 |
T |
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| Q |
317 |
taatatttttggctaaggttttaagagaagctaccaccatcacaatatctatatttcgttctcttttactattcat |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31455379 |
taatatttttggctaaggttttaagagaagctaccaccatcacaatatctatatttcgttctcttttactattcat |
31455454 |
T |
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