View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_33 (Length: 408)
Name: NF13771_low_33
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 196 - 396
Target Start/End: Complemental strand, 13017337 - 13017146
Alignment:
| Q |
196 |
caatgctaattttcctcaagttcgattttcctataatctctatatcagtcaagttaacacaattgctcatactttacgtgtagttattgatgtatatcat |
295 |
Q |
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| T |
13017337 |
caatgctaattttcctcaagatcgattttcctataatctccatatcagtcaagttaacacaattggtcatactttacgtgtagttgttgatgtatatcat |
13017238 |
T |
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| Q |
296 |
atgagagtcatattacaaccttagacaccttgatcctacataacttcttgcattgtgatgtttcctctttaatttggcgtggaattttgaattggttttg |
395 |
Q |
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| T |
13017237 |
atgagagtcatattacaa---------ccttgatcctacataacttcttgcattgtgatgtttcctctttaatttggcgtggaattttgaattggctttg |
13017147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 13017496 - 13017335
Alignment:
| Q |
12 |
agatgaagttggtgttgttcctataatggttggtgatattgtatcaaaataatcaatgtatataattggttttgactctgtatctcttatcctacaaaat |
111 |
Q |
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| T |
13017496 |
agatgaagatggtgttgttcctataatggttggtgatattgtatcaaaataatcaatgtatataattggttttgact-tgtatctcttatcctacaaaat |
13017398 |
T |
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| Q |
112 |
tcaaaattaacactgaataacttgtattaactggcttgggaccttgaatatgctccttttcaa |
174 |
Q |
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| T |
13017397 |
tcaaaattaacactgaataactggtattaactggcttgggaccttgaatatgctccttttcaa |
13017335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 11272274 - 11272318
Alignment:
| Q |
346 |
cattgtgatgtttcctctttaatttggcgtggaattttgaattgg |
390 |
Q |
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| T |
11272274 |
cattgtgatgtttcctctttaatttggcgttgtatcttgaattgg |
11272318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 390
Target Start/End: Original strand, 9936132 - 9936183
Alignment:
| Q |
339 |
cttcttgcattgtgatgtttcctctttaatttggcgtggaattttgaattgg |
390 |
Q |
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| T |
9936132 |
cttcttgcattgtgatgtctcctctttaatttggcgtggtattttaaattgg |
9936183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 8273575 - 8273628
Alignment:
| Q |
340 |
ttcttgcattgtgatgtttcctctttaatttggcgtggaattttgaattggttt |
393 |
Q |
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| T |
8273575 |
ttcttgcattttgatgtgacctcgttaatttgacgtggtattttgaattggttt |
8273628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 1034039 - 1034084
Alignment:
| Q |
343 |
ttgcattgtgatgtttcctctttaatttggcgtggaattttgaatt |
388 |
Q |
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| T |
1034039 |
ttgcattgtgatgtctcctccttaatttggcgtggaattttaaatt |
1034084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 4641106 - 4641062
Alignment:
| Q |
346 |
cattgtgatgtttcctctttaatttggcgtggaattttgaattgg |
390 |
Q |
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| T |
4641106 |
cattgtgatgtttcctctttaatttgacgtgaaatcttgaattgg |
4641062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 390
Target Start/End: Complemental strand, 32774451 - 32774401
Alignment:
| Q |
340 |
ttcttgcattgtgatgtttcctctttaatttggcgtggaattttgaattgg |
390 |
Q |
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||||| ||||||||||| ||||| |||||||||||||| || ||||||||| |
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| T |
32774451 |
ttcttacattgtgatgtatcctcgttaatttggcgtggcatattgaattgg |
32774401 |
T |
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