View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13771_low_34 (Length: 408)

Name: NF13771_low_34
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13771_low_34
NF13771_low_34
[»] chr8 (2 HSPs)
chr8 (38-259)||(23929925-23930146)
chr8 (263-408)||(23929739-23929881)
[»] chr7 (4 HSPs)
chr7 (56-259)||(15319305-15319508)
chr7 (298-395)||(15319129-15319226)
chr7 (38-228)||(40697848-40698028)
chr7 (311-395)||(15318079-15318163)
[»] chr1 (3 HSPs)
chr1 (38-121)||(9650194-9650281)
chr1 (173-259)||(9650106-9650192)
chr1 (311-395)||(9649931-9650014)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 38 - 259
Target Start/End: Complemental strand, 23930146 - 23929925
Alignment:
Q  38 tatatctataaatttatgtaatccaaaagatgtaagttgaaaagtgtcaatttaaaacttattaaccttggatctaaagaatgaagtaggcgatggagag 137  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  23930146 tatatctataaatttatgtaatccaaaagatgtaagttaaaaagtgtcgatttaaaacttaataaccttggatctaaagaatgaggtaggcaatggagag 23930047  T
Q  138 gtgtgctactcttagtccagtggtcaattaatatagcatgcaccccctgatgaaatgttgactcttcaatatttgatattcttttatgcttatatttggt 237  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  23930046 gtgtgctactcttagtccagtggtcaattaatatagcatgcaccacctgatgaaatgttgattcttcaatatttgatattcttttatgcttatatttggc 23929947  T
Q  238 cttcttgacatcttcaatcatt 259  Q
    |||| |||||||||||||||||    
T  23929946 cttcctgacatcttcaatcatt 23929925  T

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Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 263 - 408
Target Start/End: Complemental strand, 23929881 - 23929739
Alignment:
Q  263 tgttagttcttataagagcatcgtaaataagactgatgaacgaaaatgtataatcaacctttttccaccaattattgtccaataaggtatccttcacaac 362  Q
    ||||||||||| ||||| |||   ||||| ||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23929881 tgttagttcttctaagaacat---aaataggacaggtgaacgaaagtgtataatcaacctttttccaccaattatcgtccaataaggtatccttcacaac 23929785  T
Q  363 ttgtgccttttgaacatcatcatccttgtaagatcattgaccacta 408  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  23929784 ttgtgccttttgaacatcatcatccttgtaagatcattgatcacta 23929739  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 259
Target Start/End: Complemental strand, 15319508 - 15319305
Alignment:
Q  56 taatccaaaagatgtaagttgaaaagtgtcaatttaaaacttattaaccttggatctaaagaatgaagtaggcgatggagaggtgtgctactcttagtcc 155  Q
    |||||||||||||| ||||| |||||  ||||||| ||||||| ||||||||||| ||||||||||  |||||   ||| ||||||| |  ||||||| |    
T  15319508 taatccaaaagatgcaagttaaaaagcatcaatttgaaacttaataaccttggatttaaagaatgagttaggcagcggaaaggtgtgttgttcttagttc 15319409  T
Q  156 agtggtcaattaatatagcatgcaccccctgatgaaatgttgactcttcaatatttgatattcttttatgcttatatttggtcttcttgacatcttcaat 255  Q
    |   |||||||||||||||||| ||  | ||||||||   |||||||| ||||||||||||||||| |||||||||| ||| |||| | |||||||||||    
T  15319408 aactgtcaattaatatagcatgaactacatgatgaaagagtgactcttgaatatttgatattctttcatgcttatatatggccttcctaacatcttcaat 15319309  T
Q  256 catt 259  Q
    ||||    
T  15319308 catt 15319305  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 298 - 395
Target Start/End: Complemental strand, 15319226 - 15319129
Alignment:
Q  298 atgaacgaaaatgtataatcaacctttttccaccaattattgtccaataaggtatccttcacaacttgtgccttttgaacatcatcatccttgtaaga 395  Q
    |||||||||| | ||||||||||||||||||||||||| |||||||| || ||||| ||||||| ||| ||||||||||||||||||| |||||||||    
T  15319226 atgaacgaaagtatataatcaacctttttccaccaatttttgtccaacaaagtatcattcacaaattgcgccttttgaacatcatcattcttgtaaga 15319129  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 38 - 228
Target Start/End: Original strand, 40697848 - 40698028
Alignment:
Q  38 tatatctataaatttatgtaatccaaaaga---tgtaa-gttgaaaagtgtcaatttaaaacttattaaccttggatctaaagaatgaagtaggcgatgg 133  Q
    ||||||||||||||||||||||||||||||   ||||| ||| |||||| ||||||| ||||||| ||||||||||| ||||||||||                
T  40697848 tatatctataaatttatgtaatccaaaagaagatgtaaagttaaaaagtatcaatttgaaacttaataaccttggatttaaagaatga------------ 40697935  T
Q  134 agaggtgtgctactcttagtccagtggtcaattaatatagcatgcaccccctgatgaaa-tgttgactcttcaatatttgatattcttttatgctt 228  Q
       | |||||| |||||||||  ||||||||||||||||||||||||  ||||||||||  |||||||||| |||||||||||||| || ||||||    
T  40697936 ---gatgtgctcctcttagtcttgtggtcaattaatatagcatgcactacctgatgaaagagttgactcttgaatatttgatattcgttcatgctt 40698028  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 395
Target Start/End: Original strand, 15318079 - 15318163
Alignment:
Q  311 tataatcaacctttttccaccaattattgtccaataaggtatccttcacaacttgtgccttttgaacatcatcatccttgtaaga 395  Q
    ||||||||||||||| | ||||||  |||||||| || ||||||||||||| |||  |||| |||||||||||||||||||||||    
T  15318079 tataatcaaccttttgctaccaatatttgtccaacaaagtatccttcacaaattgcaccttgtgaacatcatcatccttgtaaga 15318163  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 9650281 - 9650194
Alignment:
Q  38 tatatctataaatttatgtaatccaaaaga---tgtaa-gttgaaaagtgtcaatttaaaacttattaaccttggatctaaagaatga 121  Q
    |||||||||||||||||||| ||| |||||   ||||| ||| |||||| ||||||||||||||| ||| ||||||| ||||||||||    
T  9650281 tatatctataaatttatgtattccgaaagaagatgtaaagttaaaaagtatcaatttaaaacttaataatcttggatttaaagaatga 9650194  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 9650192 - 9650106
Alignment:
Q  173 gcatgcaccccctgatgaaatgttgactcttcaatatttgatattcttttatgcttatatttggtcttcttgacatcttcaatcatt 259  Q
    ||||||||  ||||||||||   ||||| |||||||||||||||||||| |||||| ||| ||| |||| || ||||| || |||||    
T  9650192 gcatgcactacctgatgaaaaagtgactattcaatatttgatattctttcatgcttgtatatggccttcatgtcatctccattcatt 9650106  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 395
Target Start/End: Complemental strand, 9650014 - 9649931
Alignment:
Q  311 tataatcaacctttttccaccaattattgtccaataaggtatccttcacaacttgtgccttttgaacatcatcatccttgtaaga 395  Q
    |||||||||  ||||| |||| |||||| ||||  || ||||||||||||| ||||||||||  ||||||||  |||||||||||    
T  9650014 tataatcaattttttttcaccgattattatccagcaaagtatccttcacaaattgtgcctttctaacatcat-ttccttgtaaga 9649931  T

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