View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_35 (Length: 404)
Name: NF13771_low_35
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 3576123 - 3576493
Alignment:
| Q |
19 |
agcaatgatttacaagcagtagtggagcaatcaaatgaatggaaagcactagacaaatttgttgcttctcgtctaagtcaagatcaagatcatgcttcta |
118 |
Q |
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| T |
3576123 |
agcaatgatttacaagcagtagtggagcaatcaaatgaatggaaagcactagacaaatttgttgcttctcgtctaagtcaagatcaagatcatgcttcta |
3576222 |
T |
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| Q |
119 |
agggaactagtagttattgtaatgtggctcaacaaattgctttgctatcaaatgatgaatccaaaaaatcagaaactggtggccaggaacatgtgacttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3576223 |
agggaactagtagttattgtaatgtggctcaacaaattgctttgctatcaaatgatgaatccaaaaaatcagaaactggtggccaggaacatgtgacttc |
3576322 |
T |
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| Q |
219 |
aatctccaactcaaattgtcagattgacacgtggaaatgaaaatttgtaactatatatgaagatgcatattaatattatatattatagggagtagtacag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3576323 |
aatctccaactcaaattgtcagattgacacgtggaaatgaaaatttgtaactatatatgaagatgcatattaatattatatattatagggagtagtacag |
3576422 |
T |
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| Q |
319 |
tttaactcctacaaaaattaaaagggtttatgtacatagtaaacccttataaagcattgttaaatattctt |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3576423 |
tttaactcctacaaaaattaaaagggtttatgtacatagtaaacccttataaagcattgttaaatattctt |
3576493 |
T |
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