View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13771_low_37 (Length: 399)
Name: NF13771_low_37
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_37 |
 | |
|
| [»] chr4 (7 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 33750220 - 33750601
Alignment:
| Q |
18 |
gtctctgccttaaccaatgtcgtctccggctccacctccaccgaatttcacctcccaaatcccgccatcggannnnnnnnnnnnnnnnnnttagaaagaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33750220 |
gtctctgccttaaccaatgtcgtctccggctccacctccaccgaatttcacctcccaaatcccgccatcggaagcagcagcagcagcagcttagaaagaa |
33750319 |
T |
|
| Q |
118 |
ttgttccacctgcgaacatggaaacctgccaggaatgcaacattgcaggatgcttaggatgcgatttcttcccagaagagnnnnnnnnnnnnnnnnngag |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33750320 |
ttgttccacctgcgaacatagaaacctgccaggaatgcaacattgcaggatgcttaggatgcgatttcttcccagaagagaaaaaacaaaaacaaaagag |
33750419 |
T |
|
| Q |
218 |
agctaagaagaagtacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33750420 |
agctaagaagaagtacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaaca |
33750519 |
T |
|
| Q |
318 |
ttttccacggcggaggaagctgccagagcttatgtcaatgctgccatcgagttccgtgcgccgagggccaaactcaattttc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33750520 |
ttttccacggcggaggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttc |
33750601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 216 - 399
Target Start/End: Original strand, 33718945 - 33719128
Alignment:
| Q |
216 |
agagctaagaagaagtacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaa |
315 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33718945 |
agagctaaaaagaagtatagaggagtgagacagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgctgttcgtgtttggctcggaa |
33719044 |
T |
|
| Q |
316 |
cattttccacggcggaggaagctgccagagcttatgtcaatgctgccatcgagttccgtgcgccgagggccaaactcaattttc |
399 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||| |||||| ||||||||||| |||| ||||||||| || |||||||||| |
|
|
| T |
33719045 |
cctttaccacggcggaggaagctgccagagcttatgacaatgccgccatcgagtttcgtgggccgagggcaaagctcaattttc |
33719128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 216 - 399
Target Start/End: Original strand, 33735618 - 33735801
Alignment:
| Q |
216 |
agagctaagaagaagtacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||| || || |||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||| |||| |
|
|
| T |
33735618 |
agagctaagaagaagtacagaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaa |
33735717 |
T |
|
| Q |
316 |
cattttccacggcggaggaagctgccagagcttatgtcaatgctgccatcgagttccgtgcgccgagggccaaactcaattttc |
399 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||| | ||||||||| || |||||||||| ||| |||||||| |||||||||| |
|
|
| T |
33735718 |
cctttaccacggcggaggaagctgccagagcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttc |
33735801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 228 - 399
Target Start/End: Original strand, 33720976 - 33721147
Alignment:
| Q |
228 |
aagtacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacattttccacgg |
327 |
Q |
| |
|
||||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||| |||||| |
|
|
| T |
33720976 |
aagtacagaggagtgaggcagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggcttggaacctttaccacgg |
33721075 |
T |
|
| Q |
328 |
cggaggaagctgccagagcttatgtcaatgctgccatcgagttccgtgcgccgagggccaaactcaattttc |
399 |
Q |
| |
|
||||||||||||| |||||||| | |||||| || ||||||||||| | |||||| ||||| || ||||||| |
|
|
| T |
33721076 |
cggaggaagctgctagagcttacgacaatgccgctatcgagttccgcgggccgagagccaagcttaattttc |
33721147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 33718850 - 33718917
Alignment:
| Q |
121 |
ttccacctgcgaacatggaaacctgccaggaatgcaacattgcaggatgcttaggatgcgatttcttc |
188 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
33718850 |
ttccaccaacgaacatggaaacctgccgcgaatgcaacatagcaggatgtttaggatgcaatttcttc |
33718917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 33720864 - 33720930
Alignment:
| Q |
131 |
gaacatggaaacctgccaggaatgcaacattgcaggatgcttaggatgcgatttcttcccagaagag |
197 |
Q |
| |
|
|||||| |||||||| | |||||||||||| |||||||| ||||||||| |||||||||| |||||| |
|
|
| T |
33720864 |
gaacatagaaacctgtcgggaatgcaacatagcaggatgtttaggatgcaatttcttccctgaagag |
33720930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 33735540 - 33735593
Alignment:
| Q |
144 |
tgccaggaatgcaacattgcaggatgcttaggatgcgatttcttcccagaagag |
197 |
Q |
| |
|
|||| |||||||||||| |||||||| ||||||||| |||||||||| |||||| |
|
|
| T |
33735540 |
tgccgggaatgcaacatagcaggatgtttaggatgcaatttcttccctgaagag |
33735593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 6583050 - 6583102
Alignment:
| Q |
234 |
agaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgaccc |
286 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
6583050 |
agaggagtgagacaaagaccatggggaaaatgggcagctgaaatacgtgaccc |
6583102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 6568891 - 6568943
Alignment:
| Q |
234 |
agaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgaccc |
286 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
6568891 |
agaggagtgagacagagaccatggggaaaatgggcagctgaaatacgtgaccc |
6568943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 13409875 - 13409921
Alignment:
| Q |
231 |
tacagaggagtgagacaaagaccatggggtaaatgggctgctgaaat |
277 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
13409875 |
tacagaggagtgagacaaagaccatggggaaaatgggcagcagaaat |
13409921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 44331925 - 44331866
Alignment:
| Q |
222 |
aagaagaag-tacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcg |
280 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||||||| |
|
|
| T |
44331925 |
aagaagaagatacagaggagtaagacagagaccatggggaaaatgggcagcagaaattcg |
44331866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University