View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_38 (Length: 390)
Name: NF13771_low_38
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 205 - 370
Target Start/End: Original strand, 6278691 - 6278856
Alignment:
| Q |
205 |
aattattaatagtttccctaactttattgtactgaatttgttaggagataaacaaataaaattactcatactatgggcatgttcaaaggtagtctttcat |
304 |
Q |
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| T |
6278691 |
aattattaatagtttccctaactttattgtactgaatttgttaggagataaacaaataaagttactcatactctgggcatgttcaaaggtagtctttcat |
6278790 |
T |
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| Q |
305 |
atatgttttgttttgttaatattatattatgttagtaattgaatttctattaaaaatcatctataa |
370 |
Q |
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| T |
6278791 |
atatgttttgttttgttaatattatattatgttagtaattgaatttctgttaaaaatcatctataa |
6278856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 6278541 - 6278693
Alignment:
| Q |
1 |
cactccttttttcttcaaacttgcaaataagtcttaggatattgtcatattgagatgttatcgatcaattaa-ttcaaagtcttacgaagtgcatnnnnn |
99 |
Q |
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| T |
6278541 |
cactccctttttcttcaaacttgtaaataagtccttggaaattgtcatattgagatgttatcgatcaattaatttcaaagtcttacgaaatgcataaaaa |
6278640 |
T |
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| Q |
100 |
nntgtttcttaaaaatataagttaaatacttttcaaaatcataattacataat |
152 |
Q |
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| T |
6278641 |
aatgtttcttaaaaatataagttaaatacttttcaaaatcataattacataat |
6278693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 32461952 - 32461908
Alignment:
| Q |
106 |
tcttaaaaatataagttaaatacttttcaaaatcataattacata |
150 |
Q |
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| T |
32461952 |
tcttaaaaatataagttaaataattttcgaaataataaatacata |
32461908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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