View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_39 (Length: 383)
Name: NF13771_low_39
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 56 - 377
Target Start/End: Original strand, 14724291 - 14724614
Alignment:
| Q |
56 |
tttaggctacaatatgcagattggagaaatcatt--agagttagaaaagctattttggactcagacaatgatgttcgagctgtagggatttgtggactct |
153 |
Q |
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| T |
14724291 |
tttaggccacaatatccagattggagaaatcattgaagagttagaaaagctattttggactcagacaatgatgttcgagctgtagggatttgtggactct |
14724390 |
T |
|
| Q |
154 |
tgttaatgctttgtatgctagaatctctaatcaatttgatgcttgtgctttatcgacgatgtgagtaaaatttatggagactatggcccaaccgaagtgc |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14724391 |
tgttaatgctttgtatgctagaatctctaatcaatttgatgcttgtgctttatcgacgatgtgagtaaaatttatggagactatggcccaaccgaagtgc |
14724490 |
T |
|
| Q |
254 |
aaaagcaacttctttgtcaaactctaaacgaagaaaatcttcagatatgcaatctttctatgggatctaatttgattcgaactacgctatgtcaaataaa |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14724491 |
aaaagcaacttctttgtcaaactctaaacgaagaaaatcttcagatatgcaatctttctatgggatctaatttgattcgaactacgctatgtcaaataaa |
14724590 |
T |
|
| Q |
354 |
atctcttgctgttcttgatgatgt |
377 |
Q |
| |
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|||||||| ||||||||| |||| |
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| T |
14724591 |
atctcttgaagttcttgataatgt |
14724614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 17599553 - 17599150
Alignment:
| Q |
1 |
agtttttgtttggggttgtcatgtcatgatttggtactatttctctcctgtcatctttaggctacaatatgcagattggagaaatcattagagttagaaa |
100 |
Q |
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| T |
17599553 |
agtttttgtttggggttgtcatgtcatgatttggtactatttctctcctgttgtctttaggctacaatatgcagattggagaaatcattagagttagaaa |
17599454 |
T |
|
| Q |
101 |
agctattttggactcagacaatgatgttcgagctgtagggatttgtgga----------------------ctcttgttaatgctttgtatgctagaatc |
178 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17599453 |
agctattttggactcagacaatgatgttcgagctgtagggatttgtggaatgagttgaatagggaaggctactcttgttaatgctttgtatgctagaatc |
17599354 |
T |
|
| Q |
179 |
tctaatcaatttgatgcttgtgctttatcgacgatgtgagtaaaatttatggagactatggcccaaccgaagtgcaaaagcaacttctttgtcaaactct |
278 |
Q |
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| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17599353 |
tgtaatcaatttgttgcttgtgctttatcgacgatgtaagtaaaatttatggagactatggcccaaccgaagtgcaaaagaaacttctttgtcaaactct |
17599254 |
T |
|
| Q |
279 |
aaacgaagaaaatcttcagatatgcaatctttctatgggatctaatttgattcgaactacgctatgtcaaataaaatctcttgctgttcttgatgatgtc |
378 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
17599253 |
aaatgaagaaaatcttcagatatgcaatctttctatgggatctaatttgattcgaactacgctatgtcaaataaaatctcttactgttcttgataatgtt |
17599154 |
T |
|
| Q |
379 |
catc |
382 |
Q |
| |
|
|||| |
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|
| T |
17599153 |
catc |
17599150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 149 - 377
Target Start/End: Original strand, 31245106 - 31245335
Alignment:
| Q |
149 |
actcttgttaatgctttgtatgctagaatctctaatcaatttgatgcttg-tgctttatcgacgatgtgagtaaaatttatggagactatggcccaaccg |
247 |
Q |
| |
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||||||| || ||||||||||| ||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||| |||||| ||||||| | | |
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| T |
31245106 |
actcttgctactgctttgtatgatagaatctctaatcaatttgatgcttgctgctttattgaggatgtaagtaaaatttacggagaccatggcccgattg |
31245205 |
T |
|
| Q |
248 |
aagtgcaaaagcaacttctttgtcaaactctaaacgaagaaaatcttcagatatgcaatctttctatgggatctaatttgattcgaactacgctatgtca |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||| |||| || |||| ||||||||| |
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| T |
31245206 |
gagtgcaaaagcaacttctttgtcaaactctaaatgaagaaaatcttcagatatgcaatcttttcatggcatctaatctgatacgcactaggctatgtca |
31245305 |
T |
|
| Q |
348 |
aataaaatctcttgctgttcttgatgatgt |
377 |
Q |
| |
|
||||||||| ||| ||||||||| |||| |
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| T |
31245306 |
aataaaatcccttatagttcttgataatgt |
31245335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 31496959 - 31496994
Alignment:
| Q |
160 |
tgctttgtatgctagaatctctaatcaatttgatgc |
195 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
31496959 |
tgctttgtatgctaaaatctctaatcaatttgatgc |
31496994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 149 - 377
Target Start/End: Original strand, 13609157 - 13609386
Alignment:
| Q |
149 |
actcttgttaatgctttgtatgctagaatctctaatcaatttgatgcttgt-gctttatcgacgatgtgagtaaaatttatggagactatggcccaaccg |
247 |
Q |
| |
|
||||||| ||| ||||||| |||||||||| |||||||||| | ||| ||||||| || |||||||||||||||||| ||| |||||||||| | |
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| T |
13609157 |
actcttgctaaagctttgtgccctagaatctccaatcaatttgctagatgttgctttattgatgatgtgagtaaaatttatagaggttatggcccaattg |
13609256 |
T |
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| Q |
248 |
aagtgcaaaagcaacttctttgtcaaactctaaacgaagaaaatcttcagatatgcaatctttctatgggatctaatttgattcgaactacgctatgtca |
347 |
Q |
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||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||| |||| ||||||||||||||||||||||| ||||| ||||||||| |
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| T |
13609257 |
aagtgcagaagcaacttctttgtcaaactctaaatgaagataatctccagatatggaatcattctatgggatctaatttgattcaaactaggctatgtca |
13609356 |
T |
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| Q |
348 |
aataaaatctcttgctgttcttgatgatgt |
377 |
Q |
| |
|
||||||||| |||| ||||||||| |||| |
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| T |
13609357 |
aataaaatcccttgtagttcttgataatgt |
13609386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 13609093 - 13609135
Alignment:
| Q |
107 |
tttggactcagacaatgatgttcgagctgtagggatttgtgga |
149 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||| |
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|
| T |
13609093 |
tttggactcagatgatgatgttcgagttgtagggatttgtgga |
13609135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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