View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_41 (Length: 369)
Name: NF13771_low_41
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 5187831 - 5187530
Alignment:
| Q |
11 |
aagaaggagttatggaatttgcttgttatagttcaaacattaatcaactagcagacatcaagactaaacctttgaagctagaagtatttttcaaacaagg |
110 |
Q |
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| T |
5187831 |
aagaaggagttatggaatttgcttattatagttcaaacattaatcaaccagcagacatcaagactaaacctttgaagctagaagtatttttcaaacaagg |
5187732 |
T |
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| Q |
111 |
ggagtgattgttaggtatataacattgttttattctcattagtctgttagttagttatggacttagttgtttagcaagtaagctagtttgttatcaacta |
210 |
Q |
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| T |
5187731 |
ggagtgattgttaggtatataacattgttttattctcattagtctgttagttagttatggacttacttgtttggcaagtaagctagtttgttatcaacta |
5187632 |
T |
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| Q |
211 |
acttttcatacgactctatatatgccatgtatcaatgctgctaatcaatgagaatcacttttaccctacatcttctaacctttttctttcccctctcata |
310 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5187631 |
acttttcatacgactctatatatgccatgtatcaatgtagttaatcaatgagaatcagttttaccctacatcttctaaccttttcctttcccctctcata |
5187532 |
T |
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| Q |
311 |
tt |
312 |
Q |
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|| |
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| T |
5187531 |
tt |
5187530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 191 - 338
Target Start/End: Original strand, 4847911 - 4848058
Alignment:
| Q |
191 |
agctagtttgttatcaactaacttttcatacgactctatatatgccatgtatcaatgctgctaatcaatgagaatcacttttaccctacatcttctaacc |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4847911 |
agctagtttgttatcaactaacttttcatacgactctatatatgccatgtatcaatgctgctaatcaatgagaatcacttttaccctacatcttctaact |
4848010 |
T |
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| Q |
291 |
tttttctttcccctctcatattcaaccactcaagaatttttagatatt |
338 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4848011 |
ttttcctttcccctctcatattcaaccactcaagaatttttagatatt |
4848058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 4847446 - 4847505
Alignment:
| Q |
47 |
acattaatcaactagcagacatcaagactaaacctttgaagctagaagtatttttcaaac |
106 |
Q |
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| T |
4847446 |
acattaatcaactagcagacatcaagactaaacctttgaagttagaagtattcttcaaac |
4847505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 4850865 - 4850925
Alignment:
| Q |
278 |
acatcttctaacctttttctttcccctctcatattcaaccactcaagaatttttagatatt |
338 |
Q |
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|||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4850865 |
acattttctaactttttcctttcccctctcatattcaaccactcaagaatttttagatatt |
4850925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 4847607 - 4847688
Alignment:
| Q |
112 |
gagtgattgttaggtatataacattgttttattctcattagtctgttagttagttatggacttagttgtttagcaagtaagctagt |
197 |
Q |
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||||||||||||| |||| || |||||||||||||||||| || |||||||||||| ||| |||||| |||||||||||||| |
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| T |
4847607 |
gagtgattgttagatataaaaacttgttttattctcattagact----gttagttatggagttacttgttttgcaagtaagctagt |
4847688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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