View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_42 (Length: 369)
Name: NF13771_low_42
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 18265273 - 18264938
Alignment:
| Q |
18 |
atgaaactagtgtgttggaatgtgaggggttgtaacaagcccttcaagcaaaaagaaatcaaaaactttttgcttaaaaataagtttgatatgtgtattt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18265273 |
atgaaactagtgtgttggaatgtgaggggttgtaacaagcccttcaagcaaaaagaaatcaaaaactttttgcttaaaaataagtttgatatgtgtattt |
18265174 |
T |
|
| Q |
118 |
tagtagaaactagagttaaagctgacaagtttaataaaatttctagtatgatttttaagaggtggccagtgcttaataattatgatagtgccgctaatgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18265173 |
tagtagaaactagagttaaagctgacaagtttaataaaatttctagtatgatttttaagaggtggccagtgcttaataattatgatagtgccgctaatgg |
18265074 |
T |
|
| Q |
218 |
tagaatttgggtctcttggaatccaaatgtattggatgtcaagcatattgcttctagtgctcaagccattcattgtgaagtggataatctaacttcaagt |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18265073 |
tagaatttgggtctcttggaatccaaatgtattggatgtcaagcctattgcttctagtgctcaagccattcattgtgaagtggataatctaacttcaagt |
18264974 |
T |
|
| Q |
318 |
gagtgtttcaattttgtagctgtgtatgtttttaat |
353 |
Q |
| |
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|||||||||| ||||||||||||||||| ||||||| |
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| T |
18264973 |
gagtgtttcagttttgtagctgtgtatgcttttaat |
18264938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 33634537 - 33634202
Alignment:
| Q |
18 |
atgaaactagtgtgttggaatgtgaggggttgtaacaagcccttcaagcaaaaagaaatcaaaaactttttgcttaaaaataagtttgatatgtgtattt |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33634537 |
atgaaactagtgtgttggaatgtgaggggttgtaacaagcccttcaagcaaaaagaaatcaaaaactttttgcttaaaaataagtttgatatgtgtattt |
33634438 |
T |
|
| Q |
118 |
tagtagaaactagagttaaagctgacaagtttaataaaatttctagtatgatttttaagaggtggccagtgcttaataattatgatagtgccgctaatgg |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33634437 |
tagtagaaactagaattaaagctgacaagtttaataaaatttctagtatgatttttaagaggtggccagtgcttaataattatgatagtgccgctaatgg |
33634338 |
T |
|
| Q |
218 |
tagaatttgggtctcttggaatccaaatgtattggatgtcaagcatattgcttctagtgctcaagccattcattgtgaagtggataatctaacttcaagt |
317 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33634337 |
tagaatttgggtctcttggaatccaactgtattggatgtcaagcctattgcttctagtgctcaagccattcattgtgaagtggataatctaacttcaagt |
33634238 |
T |
|
| Q |
318 |
gagtgtttcaattttgtagctgtgtatgtttttaat |
353 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
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|
| T |
33634237 |
gagtgtttcaattttgtagctgtgtatgcttttaat |
33634202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 3941305 - 3940970
Alignment:
| Q |
18 |
atgaaactagtgtgttggaatgtgaggggttgtaacaagcccttcaagcaaaaagaaatcaaaaactttttgcttaaaaataagtttgatatgtgtattt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3941305 |
atgaaactagtgtgttggaatgtgaggggttgtaacaagcccttcaagcaaaaagaaatcaaaaactttttgcttaaaaataagtttgatatgtgtattt |
3941206 |
T |
|
| Q |
118 |
tagtagaaactagagttaaagctgacaagtttaataaaatttctagtatgatttttaagaggtggccagtgcttaataattatgatagtgccgctaatgg |
217 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3941205 |
tagtagaaactagagttaaagctaacaagtttaataaaatttctagtatgatttttaagaggtggccagtgcttaataattatgatagtgccgctaatgg |
3941106 |
T |
|
| Q |
218 |
tagaatttgggtctcttggaatccaaatgtattggatgtcaagcatattgcttctagtgctcaagccattcattgtgaagtggataatctaacttcaagt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3941105 |
tagaatttgggtctcttggaatccaaatgtattggatgtcaagcctattgcttctagtgctcaagccattcattgtgaagtggttaatctaacttcaagt |
3941006 |
T |
|
| Q |
318 |
gagtgtttcaattttgtagctgtgtatgtttttaat |
353 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
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| T |
3941005 |
gagtgtttcaattttgtagctgtgtatgcttttaat |
3940970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 5665884 - 5665940
Alignment:
| Q |
50 |
taacaagcccttcaagcaaaaagaaatcaaaaactttttgcttaaaaataagtttga |
106 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||||||||||| |||||||| ||||| |
|
|
| T |
5665884 |
taacaagccattcaagcaaaaagaaataagaaactttttgcacaaaaataaatttga |
5665940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 187 - 353
Target Start/End: Complemental strand, 35169330 - 35169164
Alignment:
| Q |
187 |
tgcttaataattatgatagtgccgctaatggtagaatttgggtctcttggaatccaaatgtattggatgtcaagcatattgcttctagtgctcaagccat |
286 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| | | |||||||||||||||||||||| |
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| T |
35169330 |
tgcttaataattatgatagtgcctctaatggaagaatttgggtctcttggaatccaaatgtattggatctcaaacctgttgcttctagtgctcaagccat |
35169231 |
T |
|
| Q |
287 |
tcattgtgaagtggataatctaacttcaagtgagtgtttcaattttgtagctgtgtatgtttttaat |
353 |
Q |
| |
|
|||||||||||| | |||||||||||||| | ||||||||||||||||||||||||||| ||||||| |
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| T |
35169230 |
tcattgtgaagttgttaatctaacttcaaataagtgtttcaattttgtagctgtgtatgcttttaat |
35169164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 40950425 - 40950537
Alignment:
| Q |
30 |
tgttggaatgtgaggggttgtaacaagcccttcaagcaaaaagaaatcaaaaactttttgcttaaaaataagtttgatatgtgtattttagtagaaacta |
129 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| ||| ||||| ||||| || ||| |||| | ||||||| |
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|
| T |
40950425 |
tgttggaatgtgaggggcatcaacaagcccttcaagcaaaaagaaattaaaaacttattgcataagaataaatttgaaatttgtgttttgcttgaaacta |
40950524 |
T |
|
| Q |
130 |
gagttaaagctga |
142 |
Q |
| |
|
||||||||||||| |
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|
| T |
40950525 |
gagttaaagctga |
40950537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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