View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13771_low_45 (Length: 362)
Name: NF13771_low_45
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_45 |
 | |
|
| [»] scaffold0086 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 79 - 342
Target Start/End: Complemental strand, 40925675 - 40925412
Alignment:
| Q |
79 |
ttcatcaacaccgaaacaagttggctagttgagacatggactcatgcaaataaggtatgtcgtcacactgttatgattatcttatctaacgagtttttca |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
40925675 |
ttcatcaacaccgaaacaagttggctagttgagacatggactcatgcaaataaggtatgtcgtcacactgttatgagtatcttatctaacgagttgttca |
40925576 |
T |
|
| Q |
179 |
atgtgtatttccggtacaaggaagcaaaagaaacatgggattcaatgtttctgaaatacacggttgaaggcatgctggaaagaaaaacttcgccatctgg |
278 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40925575 |
atgtgtatttccagtacaaggaagcaaaagaaacatgggattcaatgtttctgaaatacacggttgaaggcatgctggaaagaaaaacttcgccatctgg |
40925476 |
T |
|
| Q |
279 |
caactatgaacaatgataaaagacagatattaaggatcaaatgaatgaatatcacataatgaaa |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40925475 |
caactatgaacaatgataaaagacagatattaaggatcaaatgaatgaatatcacataatgaaa |
40925412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 40925945 - 40925872
Alignment:
| Q |
7 |
gaattgatctgctcctgccaccttgaaaagattctgaccagcaaagacttcaattttttataggccacggaatt |
80 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40925945 |
gaattgatctgctcctgccaccttgaaaagattctgaccagcaaagacttcaattttttatacgccacggaatt |
40925872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 40926018 - 40926060
Alignment:
| Q |
105 |
agttgagacatggactcatgcaaataaggtatgtcgtcacact |
147 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40926018 |
agttgagacatggactcatacaaataaggtatgtcgtcacact |
40926060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 270
Target Start/End: Original strand, 44313626 - 44313773
Alignment:
| Q |
121 |
catgcaaataaggtatgtcgtcacactgttatgattatcttatctaacgagtttttcaatgtgtatttccggtacaaggaagcaaaagaaacatgggatt |
220 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| || ||| ||||| ||||| ||| |||| || | |||||||||||| || |||| |||||||| |
|
|
| T |
44313626 |
catgcaaataaggtatgtcgtcacactattatgactaccttgtctaatgagttattcgatgtctactgttcgtacaaggaagcgaaggaaatatgggatt |
44313725 |
T |
|
| Q |
221 |
caatgtttctgaaatacacggttgaaggcatgctggaaagaaaaacttcg |
270 |
Q |
| |
|
| ||| |||||||||| || | |||| ||||||||||||||||||||| |
|
|
| T |
44313726 |
ccatggttctgaaatataccgctgaa--aatgctggaaagaaaaacttcg |
44313773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 270
Target Start/End: Complemental strand, 34099266 - 34099119
Alignment:
| Q |
121 |
catgcaaataaggtatgtcgtcacactgttatgattatcttatctaacgagtttttcaatgtgtatttccggtacaaggaagcaaaagaaacatgggatt |
220 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| || ||| ||||| ||||| ||| |||| || | |||||||||||| || |||| |||||||| |
|
|
| T |
34099266 |
catgcaaataaggtatgtcgtcacactattatgactaccttgtctaatgagttattcgatgtctactgttcgtacaaggaagcgaaggaaatatgggatt |
34099167 |
T |
|
| Q |
221 |
caatgtttctgaaatacacggttgaaggcatgctggaaagaaaaacttcg |
270 |
Q |
| |
|
| ||| |||||||||| || | |||| ||||||||||||||||||||| |
|
|
| T |
34099166 |
ccatggttctgaaatataccgctgaa--aatgctggaaagaaaaacttcg |
34099119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 121 - 270
Target Start/End: Complemental strand, 40905 - 40758
Alignment:
| Q |
121 |
catgcaaataaggtatgtcgtcacactgttatgattatcttatctaacgagtttttcaatgtgtatttccggtacaaggaagcaaaagaaacatgggatt |
220 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||| || ||| ||||| ||||| ||| |||| || | |||||||||||| || |||| |||||||| |
|
|
| T |
40905 |
catgcaaataaggtatgtcgccacactattatgactaccttgtctaatgagttattcgatgtctactgttcgtacaaggaagcgaaggaaatatgggatt |
40806 |
T |
|
| Q |
221 |
caatgtttctgaaatacacggttgaaggcatgctggaaagaaaaacttcg |
270 |
Q |
| |
|
| ||| |||||||||||| | |||| ||||||||||||||||||||| |
|
|
| T |
40805 |
ccatggttctgaaatacaacgctgaa--aatgctggaaagaaaaacttcg |
40758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 117 - 234
Target Start/End: Complemental strand, 6717189 - 6717069
Alignment:
| Q |
117 |
gactcatgcaaat-aaggtatgtcgtcacactgttatgattatcttat--ctaacgagtttttcaatgtgtatttccggtacaaggaagcaaaagaaaca |
213 |
Q |
| |
|
||||||||||||| |||||||| | ||||||| |||||| || ||||| |||| ||||| ||| ||||||| ||| |||||||||||| |||| || | |
|
|
| T |
6717189 |
gactcatgcaaattaaggtatgccatcacactattatgagtaccttatatctaatgagttgttccatgtgtacttctcgtacaaggaagcgaaaggaata |
6717090 |
T |
|
| Q |
214 |
tgggattcaatgtttctgaaa |
234 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
6717089 |
tgggattcaatggttctgaaa |
6717069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 6716452 - 6716526
Alignment:
| Q |
192 |
gtacaaggaagcaaaagaaacatgggattcaatgtttctgaaatacacggttgaaggcatgctggaaagaaaaacttc |
269 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||| |||||| |
|
|
| T |
6716452 |
gtacaaggaagcgaaagaaatatgggattcaatgttt-tgaaatacattgttgaag--atgctggaaagaataacttc |
6716526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University