View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_47 (Length: 360)
Name: NF13771_low_47
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 151 - 344
Target Start/End: Original strand, 34040765 - 34040958
Alignment:
| Q |
151 |
ccccacgaggctttcggttttgccgcaaaacatcaccgtcatgctccgccgcatcaccaccgccacccatatacaaactcataatcttctccgccacctc |
250 |
Q |
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| T |
34040765 |
ccccacgaggctttcggttttgccgtaaaacatcactgtcatgctccgccgcatcaccaccgccacccatatacaaactcataatcttctccgccacctc |
34040864 |
T |
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| Q |
251 |
agacccatcattactctcttccatcaacttttccaactgggctttaggaagcctcatcttcaccctcatggacccatcaaagggcctatcaaag |
344 |
Q |
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| T |
34040865 |
agacccatcattactctcttccatcaacttttccaactgggctttaggaagcctcatcttcaccctcatggacccatcaaagggcctatcaaag |
34040958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 34040618 - 34040686
Alignment:
| Q |
4 |
cattatgcaactccatccaagcacaacgacgaaacttcaagccactttcaaagaatgttatcatgtgac |
72 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34040618 |
cattatgcaactccatccaaacacaacgacgaaacttcaagccactttcaaagaatgttatcatgtgac |
34040686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 329
Target Start/End: Original strand, 30370973 - 30371086
Alignment:
| Q |
216 |
cccatatacaaactcataatcttctccgccacctcagacccatcattactctcttccatcaacttttccaactgggctttaggaagcctcatcttcaccc |
315 |
Q |
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|||||||||||||| | |||||||||||||||||| | ||||| |||||| ||||||||||| |||||||| || ||||||| |||||| || |||| |
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| T |
30370973 |
cccatatacaaacttacaatcttctccgccacctcggctccatcgcgactctcctccatcaacttatccaactgagccttaggaatcctcatttttaccc |
30371072 |
T |
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| Q |
316 |
tcatggacccatca |
329 |
Q |
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| T |
30371073 |
tagtggacccatca |
30371086 |
T |
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