View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_57 (Length: 327)
Name: NF13771_low_57
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 24560189 - 24560499
Alignment:
| Q |
1 |
ccaactatcctccctaaccaacattctaactctacctcttcaaacctatctcccctttgcatattctgtttctccttcccttcacaaaccaaacacaaaa |
100 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24560189 |
ccaactatcctccctaacaaacattccaactctacctcttcaaacctatctcccctttgcatattctgtttctctttcccttcacaaaccaaacacaaaa |
24560288 |
T |
|
| Q |
101 |
actaaaataacaccnnnnnnnnnnnnccaaattagaaaattagaattctcctatagttcttgaaaatgtccattaaaagcaaaagggtatgctttagtcc |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24560289 |
actaaaataacac-ttttttttttttccaaattagaaaattagaattctcctatagttcttgaaaatgtccattaaaagcaaaagggtatgctttagtcc |
24560387 |
T |
|
| Q |
201 |
taatgtcaatgacacaccaacattttttctcatgaagagggaaattggaagtggtaatttcaaattaaccaaagaacaaacaagattgtcatcacctttg |
300 |
Q |
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|||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24560388 |
taatgtcaatgacataccaacattttttctcaagaagagagaaattggaagtggtaatttcaaattaaccaaagaacaaacaagattgtcatcacctttg |
24560487 |
T |
|
| Q |
301 |
aaattcctagtg |
312 |
Q |
| |
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|||||||||||| |
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| T |
24560488 |
aaattcctagtg |
24560499 |
T |
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