View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13771_low_59 (Length: 321)

Name: NF13771_low_59
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13771_low_59
NF13771_low_59
[»] chr4 (1 HSPs)
chr4 (9-304)||(3322620-3322915)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 3322915 - 3322620
Alignment:
Q  9 agcacagacacatcaccatctcatcatcatggaagaaaagctagttcaagttcatttggaagcatatctgaaaatgaagaagaagttgaagaaatcaaga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3322915 agcacagacacatcaccatctcatcatcatggaagaaaagctagttcaagttcatttggaagcatatctgaaaatgaagaagaagttgaagaaatcaaga 3322816  T
Q  109 aaccaaattcctttttgctaattccacccccttacttcaaaccacaaaaaactaataacaaaggtgaaataaattccaacaaaacatcagactctgaacc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3322815 aaccaaattcctttttgctaattccacccccttacttcaaaccacaaaaaactaataacaaaggtgaaataaattccaacaaaacatcagactctgaacc 3322716  T
Q  209 attggagaaaaatattgattcaagtggattgaaaccaacaacatcagtggaaacatcatcttcaaaagggtatgcacaaatgtggggtggtgcatg 304  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3322715 attagagaaaaatattgattcaagtggattgaaaccaacaacatcagtggaaacatcatcttcaaaagggtatgcacaaatgtggggtggtgcatg 3322620  T

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