View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_6 (Length: 638)
Name: NF13771_low_6
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 75 - 624
Target Start/End: Original strand, 52630846 - 52631396
Alignment:
| Q |
75 |
taagaggtaaataatatttgacgttgaatttctttgtatgtcatgggagtaatgtctaaatgatgcaatttcagtgatgaggcaaacaccattaatgtat |
174 |
Q |
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| T |
52630846 |
taagagataaataatatttgacgttgaatttctttgtatgtcatgggagtaatgtctaaatgatgcaatttcagtgatgaggcaaacaccattaatgtat |
52630945 |
T |
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| Q |
175 |
aagggaggtgggtgttttttaaaaattaaaggggggtgaaagtgttattctataagactttacaggaggttattgcaatttgccnnnnnnnntagaggaa |
274 |
Q |
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| T |
52630946 |
aagggaggtgggtgttttttaaaaattaaaggggggtgaaagtgttattctataagactttacaggaggttattgcaatttgccaaagaaaatagaggaa |
52631045 |
T |
|
| Q |
275 |
ttggccgcaaaaactcattgatccaggtgtttatcttgtttggaatatctaactatgaaagtcaactatnnnnnnncggtgtgaatcacaattttgtaat |
374 |
Q |
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| T |
52631046 |
ttggccgcaaaaactcattgatccagatatttatcttgtttggaatatctaactatgaaagtcaactataaaaaaatggtgtgaatcacaattttgtaat |
52631145 |
T |
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| Q |
375 |
ccactcgttccagcggaaataatcacataatataatatttggattttccaattttatccccatattttcaacacacataactttaacacaaggagatata |
474 |
Q |
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| T |
52631146 |
ccactcattccagagaaaagactcacataatataatatttggattttccaattttatccccatattttcatcacacataactttaacacaaggaaatata |
52631245 |
T |
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| Q |
475 |
tgttatttgaataattattttttaggacaacataaaaataagcaaacatat-aaaaagaaatatatgtatcaacaagaaaatcaatgtactagagagaga |
573 |
Q |
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| T |
52631246 |
tgttatttgaacaactattttttaagacaacgtaaaaataagcaaacatataaaaaagaaatatatgtattaacaagaaaaccaatgtactagagagaga |
52631345 |
T |
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| Q |
574 |
ctaagagtgtgttttgtttagcttnnnnnnnggtttgagatttacttttcc |
624 |
Q |
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| T |
52631346 |
ctaagagtgtgttttgtttagcttaaaaaaaggtttgagatttacttttcc |
52631396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 52630434 - 52630497
Alignment:
| Q |
16 |
aatatgaattatgt-cggtgttgttctttgtataatatttgcttttttggattaatgaagtaag |
78 |
Q |
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| T |
52630434 |
aatatgaattatgttcggtgttgttctttgtataatatttgcttttttggattaatgaagtaag |
52630497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 14601356 - 14601411
Alignment:
| Q |
115 |
tcatgggagtaatgtctaaatgatgcaatttcagtgatgaggcaaacaccattaat |
170 |
Q |
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| T |
14601356 |
tcatgggagtaatgtttaaataatgcaatttaagtgatgaggtaaacaccattaat |
14601411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 41405515 - 41405548
Alignment:
| Q |
472 |
atatgttatttgaataattattttttaggacaac |
505 |
Q |
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| T |
41405515 |
atatgttatttgaataataattttttaggacaac |
41405548 |
T |
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