View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_60 (Length: 318)
Name: NF13771_low_60
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 46666532 - 46666834
Alignment:
| Q |
7 |
tttagttctggtatcaataacgtgacattgatttttggcttatactttgcaagaattgtagcctgcagaagcataacaggatcagatttaaaaccaaaaa |
106 |
Q |
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| T |
46666532 |
tttagttctggtatcaataacgtgacattgatttttggcttatactttgcaagaattgtagcctgcagaagcataacaggatcagatttaaaaccaaaaa |
46666631 |
T |
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| Q |
107 |
agattatagcaagaaagagtgaaaaaatcagtgacctccattgtagagtgcacatgagacttgtgtgttccattcaatagcttgacatctttgtcatagg |
206 |
Q |
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| T |
46666632 |
agattatagcaagaaagagtgaaaaaatcagtgacctccattgtagagtgcacatgagacttgtgtgttccattcaatagcttgacatctttgtcatagg |
46666731 |
T |
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| Q |
207 |
agttggctaatacagataccattctacggagtaaatttcttctgaacaagaatattgtagaaactcgtttttgctccaaatattcaactatttcttgatg |
306 |
Q |
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| T |
46666732 |
agttggctagtacagataccattctacggagtaaatttcttctgaacaagaatattgtagaaacttgtttttgctccaaatattcaactatttctttatg |
46666831 |
T |
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| Q |
307 |
atg |
309 |
Q |
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| T |
46666832 |
atg |
46666834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 277
Target Start/End: Complemental strand, 6117909 - 6117768
Alignment:
| Q |
136 |
agtgacctccattgtagagtgcacatgagacttgtgtgttccattcaatagcttgacatctttgtcataggagttggctaatacagataccattctacgg |
235 |
Q |
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| T |
6117909 |
agtgacctctattgtggagtggacatgagatttgtgggttccattgagctgtttggcatgtttgtcataggaatttgctagcacagatactgatctactt |
6117810 |
T |
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| Q |
236 |
agtaaatttcttctgaacaagaatattgtagaaactcgtttt |
277 |
Q |
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| T |
6117809 |
agcaaattccttcttaaaaggaatattgcagaaactcctttt |
6117768 |
T |
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