View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_63 (Length: 306)
Name: NF13771_low_63
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 24377020 - 24377176
Alignment:
| Q |
1 |
agcacggaataatcggcggcaatggctaaacaacctttgaaagttgagtatataacatc---ccaactcagtcggatttagaatctccacactcggtgcg |
97 |
Q |
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| T |
24377020 |
agcacggaataatcggcggcaatggctaaacaacctttgaaagtggagtatataacaacaacccaactcagtcggatttagaatctccacactcggtgcg |
24377119 |
T |
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| Q |
98 |
ggatccttacccggttcagtac-----ttcaggtacccactccacccacctcttctca |
150 |
Q |
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| T |
24377120 |
g-atccttacccggttcagtaaagtagttcaggtccccactccacccacctcttctca |
24377176 |
T |
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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 273
Target Start/End: Original strand, 24377326 - 24377355
Alignment:
| Q |
244 |
gatcttcatcgttgctcgaaaaggatccta |
273 |
Q |
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| T |
24377326 |
gatcttcatcgttgctcgaaaaggatccta |
24377355 |
T |
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