View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13771_low_64 (Length: 304)

Name: NF13771_low_64
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13771_low_64
NF13771_low_64
[»] chr5 (11 HSPs)
chr5 (18-294)||(43311542-43311818)
chr5 (40-270)||(39487372-39487602)
chr5 (40-272)||(39461160-39461392)
chr5 (40-288)||(39484170-39484418)
chr5 (70-289)||(39476449-39476668)
chr5 (40-257)||(39451907-39452124)
chr5 (40-257)||(39455535-39455752)
chr5 (38-294)||(39457307-39457563)
chr5 (38-285)||(39463578-39463825)
chr5 (40-270)||(39472937-39473167)
chr5 (19-131)||(39469935-39470047)


Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 43311818 - 43311542
Alignment:
Q  18 gaagggaaccatgggtgagacatctgattactctctttctgatttggtcgcagttttacctgaagggttcttagatcgaacagctaggactggaagggtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43311818 gaagggaaccatgggtgagacatctgattactctctttctgatttggtcgcagttttacctgaagggttcttagatcgaacagctaggactggaagggtc 43311719  T
Q  118 attggatgggctcctcaggtccaagtactcgctcatccagcaacaggaggctttgtttcacattgcggttggaattcgattctcgagagcatatattatg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  43311718 attggatgggctcctcaggtccaagtactcgctcatccagcaacaggaggctttgtttcacattgtggttggaattcgactctcgagagcatatattatg 43311619  T
Q  218 gtgtgcctattgccacatggccactctttgctgatcaacaaaccaatgcttttcaacttgtgtctgagctgatgatg 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43311618 gtgtgcctattgccacatggccactctttgctgatcaacaaaccaatgcttttcaacttgtgtctgagctgaagatg 43311542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 40 - 270
Target Start/End: Original strand, 39487372 - 39487602
Alignment:
Q  40 tctgattactctctttctgatttggtcgcagttttacctgaagggttcttagatcgaacagctaggactggaagggtcattggatgggctcctcaggtcc 139  Q
    ||||||||| |||||||||||||||   | |||||||||||||| ||||||||||||||| |  ||| ||||||||| ||||||||||| |  |||| ||    
T  39487372 tctgattaccctctttctgatttggaatcggttttacctgaaggattcttagatcgaacaacagggattggaagggtaattggatgggcccaacaggccc 39487471  T
Q  140 aagtactcgctcatccagcaacaggaggctttgtttcacattgcggttggaattcgattctcgagagcatatattatggtgtgcctattgccacatggcc 239  Q
    || |||| ||||||||||| || ||||| |||||||| ||||| ||||||||||| |  |||||||||||||||| |||||||||||||||| | |||||    
T  39487472 aaatactagctcatccagccactggaggatttgtttcgcattgtggttggaattcaacactcgagagcatatattttggtgtgcctattgccgcgtggcc 39487571  T
Q  240 actctttgctgatcaacaaaccaatgctttt 270  Q
    ||||| |||||| |||||  | |||||||||    
T  39487572 actctatgctgagcaacaggctaatgctttt 39487602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 40 - 272
Target Start/End: Original strand, 39461160 - 39461392
Alignment:
Q  40 tctgattactctctttctgatttggtcgcagttttacctgaagggttcttagatcgaacagctaggactggaagggtcattggatgggctcctcaggtcc 139  Q
    ||||||||||||||| |||| |||| |   |||||||| ||||||||||||||||| |||||  ||| |||||||||||||||||||||||| |||   |    
T  39461160 tctgattactctcttactgaattgggcttggttttacccgaagggttcttagatcggacagcagggattggaagggtcattggatgggctccgcagactc 39461259  T
Q  140 aagtactcgctcatccagcaacaggaggctttgtttcacattgcggttggaattcgattctcgagagcatatattatggtgtgcctattgccacatggcc 239  Q
    || || | || || ||||| || ||||| || ||||| ||||| || |||||||| || ||||||||||| |||| ||||||||| |||||||| |||||    
T  39461260 aaatattggcccacccagccacgggaggattcgtttcccattgtggctggaattcaatactcgagagcatgtattttggtgtgcccattgccacgtggcc 39461359  T
Q  240 actctttgctgatcaacaaaccaatgcttttca 272  Q
     ||||||||||| ||||| || |||||||||||    
T  39461360 gctctttgctgaacaacagactaatgcttttca 39461392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 40 - 288
Target Start/End: Original strand, 39484170 - 39484418
Alignment:
Q  40 tctgattactctctttctgatttggtcgcagttttacctgaagggttcttagatcgaacagctaggactggaagggtcattggatgggctcctcaggtcc 139  Q
    |||||||||||||||| ||||||||   | |||||||||||||| |||||||||||||| ||   || ||||||| | ||| ||||||| |  || | ||    
T  39484170 tctgattactctctttatgatttgggtccggttttacctgaaggattcttagatcgaactgccgagattggaaggataattagatgggcccaacaagccc 39484269  T
Q  140 aagtactcgctcatccagcaacaggaggctttgtttcacattgcggttggaattcgattctcgagagcatatattatggtgtgcctattgccacatggcc 239  Q
    || |||| || || ||||| | |||||| |||||||||||||  ||||||||||| |  |||||||||||||||| |||||||||||||||| |||||||    
T  39484270 aaatactagcccacccagccataggaggatttgtttcacattatggttggaattcaacactcgagagcatatattttggtgtgcctattgccgcatggcc 39484369  T
Q  240 actctttgctgatcaacaaaccaatgcttttcaacttgtgtctgagctg 288  Q
    |||||||| ||| |||||  | ||||||||| || | |||| |||||||    
T  39484370 actctttgttgaacaacaggctaatgcttttgaattggtgtgtgagctg 39484418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 70 - 289
Target Start/End: Original strand, 39476449 - 39476668
Alignment:
Q  70 gttttacctgaagggttcttagatcgaacagctaggactggaagggtcattggatgggctcctcaggtccaagtactcgctcatccagcaacaggaggct 169  Q
    |||||||||||||| ||||||||| |||| |||  || ||||||| |  |||||||||| |  |||| |||| |||| || || ||||| | |||||| |    
T  39476449 gttttacctgaaggattcttagatagaactgctgagattggaaggatagttggatgggcccaacaggcccaaatactagcccacccagccataggaggat 39476548  T
Q  170 ttgtttcacattgcggttggaattcgattctcgagagcatatattatggtgtgcctattgccacatggccactctttgctgatcaacaaaccaatgcttt 269  Q
    ||||||||||||| ||||||||||| |  |||||||||||||||| |||||| || |||||| ||||||||||||||||||| |||||  | ||||||||    
T  39476549 ttgtttcacattgtggttggaattcaacactcgagagcatatattttggtgtaccaattgccgcatggccactctttgctgaacaacaggctaatgcttt 39476648  T
Q  270 tcaacttgtgtctgagctga 289  Q
    | || | |||| ||||||||    
T  39476649 tgaattggtgtgtgagctga 39476668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 257
Target Start/End: Original strand, 39451907 - 39452124
Alignment:
Q  40 tctgattactctctttctgatttggtcgcagttttacctgaagggttcttagatcgaacagctaggactggaagggtcattggatgggctcctcaggtcc 139  Q
    ||||||||| ||||||||||| ||    | |||||||| ||||| |||||||||||||| |    || ||||||||| ||||| ||||| || || | ||    
T  39451907 tctgattacactctttctgatctgtgttcggttttaccagaaggattcttagatcgaacggaagagattggaagggtgattggttgggccccacaagccc 39452006  T
Q  140 aagtactcgctcatccagcaacaggaggctttgtttcacattgcggttggaattcgattctcgagagcatatattatggtgtgcctattgccacatggcc 239  Q
    || |||| || |||||||| | |||||| |||||||||||||| || |||||||| |  |||||||||||||||| ||||||||| ||||| ||||||||    
T  39452007 aaatactagcacatccagccataggaggatttgtttcacattgtggctggaattccacactcgagagcatatattttggtgtgcccattgcaacatggcc 39452106  T
Q  240 actctttgctgatcaaca 257  Q
     ||||||||||| |||||    
T  39452107 gctctttgctgagcaaca 39452124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 257
Target Start/End: Original strand, 39455535 - 39455752
Alignment:
Q  40 tctgattactctctttctgatttggtcgcagttttacctgaagggttcttagatcgaacagctaggactggaagggtcattggatgggctcctcaggtcc 139  Q
    ||||||||| ||||||||||||||    |  ||||||| ||||| ||||||||||| || ||   || ||||||||| ||||| |||||||| ||   ||    
T  39455535 tctgattacactctttctgatttgtgttcgattttacccgaaggattcttagatcgtacggcagagattggaagggtgattggttgggctccacaaaccc 39455634  T
Q  140 aagtactcgctcatccagcaacaggaggctttgtttcacattgcggttggaattcgattctcgagagcatatattatggtgtgcctattgccacatggcc 239  Q
    || |||| || |||||||| |||||||| |||||||||||||| ||||||||||| |  |||||| ||||||| | ||||||||| ||||| ||||||||    
T  39455635 aaatactagcccatccagccacaggaggatttgtttcacattgtggttggaattccacactcgagggcatatactttggtgtgcccattgcaacatggcc 39455734  T
Q  240 actctttgctgatcaaca 257  Q
     ||||||||||| |||||    
T  39455735 gctctttgctgaacaaca 39455752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 294
Target Start/End: Complemental strand, 39457563 - 39457307
Alignment:
Q  38 catctgattactctctttctgatttggtcgcagttttacctgaagggttcttagatcgaacagctaggactggaagggtcattggatgggctcctcaggt 137  Q
    ||||||||||| ||||||||||||||    | |||||||| ||||| ||||||||| | |||||   || ||||||||| ||||||||||| || |||      
T  39457563 catctgattacactctttctgatttgagttcggttttaccagaaggattcttagataggacagcagagattggaagggttattggatgggccccacagac 39457464  T
Q  138 ccaagtactcgctcatccagcaacaggaggctttgtttcacattgcggttggaattcgattctcgagagcatatattatggtgtgcctattgccacatgg 237  Q
     ||  |||| || || ||||| || ||||| |||||||| ||||| || |||||||| |  ||||||| |||||||| |||||||||| ||||||| |||    
T  39457463 gcacatactagcccacccagccacgggaggatttgtttctcattgtggctggaattccacactcgagaacatatattttggtgtgcctgttgccacgtgg 39457364  T
Q  238 ccactctttgctgatcaacaaaccaatgcttttcaacttgtgtctgagctgatgatg 294  Q
    || |||||||||||||| || || ||||| |||||| | || | |||||||| ||||    
T  39457363 ccgctctttgctgatcagcagacaaatgcatttcaattggtatgtgagctgaagatg 39457307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 38 - 285
Target Start/End: Complemental strand, 39463825 - 39463578
Alignment:
Q  38 catctgattactctctttctgatttggtcgcagttttacctgaagggttcttagatcgaacagctag-gactggaagggtcattggatgggctcctcagg 136  Q
    ||||||||||| ||||||||||||| |   | |||||||| ||||| |||||| |||| || | ||| || ||||||||| ||||| |||||||| ||||    
T  39463825 catctgattaccctctttctgatttaggttccgttttacccgaaggattcttatatcggactg-tagagattggaagggtgattggttgggctccacagg 39463727  T
Q  137 tccaagtactcgctcatccagcaacaggaggctttgtttcacattgcggttggaattcgattctcgagagcatatattatggtgtgcctattgccacatg 236  Q
     |||| |||| || || || || || ||||| ||||| |||||||| || ||||||||||  || ||||||||||||| |||||| ||  ||||||| ||    
T  39463726 cccaaatactagcccacccggccacgggaggatttgtctcacattgtggctggaattcgacactggagagcatatattttggtgttccacttgccacttg 39463627  T
Q  237 gccactctttgctgatcaacaaaccaatgcttttcaacttgtgtctgag 285  Q
    |||  |||||||||| ||||| || ||||||||| |||| |||| ||||    
T  39463626 gccgatctttgctgaacaacagacaaatgcttttgaactggtgtgtgag 39463578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 270
Target Start/End: Original strand, 39472937 - 39473167
Alignment:
Q  40 tctgattactctctttctgatttggtcgcagttttacctgaagggttcttagatcgaacagctaggactggaagggtcattggatgggctcctcaggtcc 139  Q
    ||||||||| |||||| ||||||||   ||  |||||| ||||| || ||||| || |||||   || |||||||||  |||||||||| || || ||||    
T  39472937 tctgattaccctctttttgatttgggttcaagtttacccgaaggatttttagagcggacagcagagattggaagggttgttggatgggccccacaagtcc 39473036  T
Q  140 aagtactcgctcatccagcaacaggaggctttgtttcacattgcggttggaattcgattctcgagagcatatattatggtgtgcctattgccacatggcc 239  Q
    || |||| || || ||||| |  ||||| |||| ||| ||||| |||||||||||  | ||||||||||| |||| |||||||||||| ||| |||||||    
T  39473037 aaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattcagtactcgagagcatttattttggtgtgcctatagccgcatggcc 39473136  T
Q  240 actctttgctgatcaacaaaccaatgctttt 270  Q
    ||| | ||| || ||||| || |||||||||    
T  39473137 actttatgcagaacaacagactaatgctttt 39473167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 39470047 - 39469935
Alignment:
Q  19 aagggaaccatgggtgagacatctgattactctctttctgatttggtcgcagttttacctgaagggttcttagatcgaacagctaggactggaagggtca 118  Q
    ||||| ||||||| || | ||||||||||| ||||||||||||||    | |||||||| ||||| ||||||||| | ||||    || ||||||||| |    
T  39470047 aagggcaccatggttgcgccatctgattaccctctttctgatttgagttcggttttaccagaaggattcttagataggacagaagagattggaagggtta 39469948  T
Q  119 ttggatgggctcc 131  Q
    |||||||||||||    
T  39469947 ttggatgggctcc 39469935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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