View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_65 (Length: 292)
Name: NF13771_low_65
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 39030764 - 39031026
Alignment:
| Q |
19 |
tcggcatgtacttagtgagtatggtaacatgtcaagtccatccgtgttattcattttggatgagatgaggaggaagtcaaaagaagaaggacttggcaca |
118 |
Q |
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| T |
39030764 |
tcggcatgtacttagtgagtatggtaacatgtcaagtccatccgtgttattcattttggatgagatgaggaggaagtcaaaagaagaaggacttggcaca |
39030863 |
T |
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| Q |
119 |
acaggagaaggacttgaatggggcgtgcttttaagttttggacctggactcactgtcgagactgttgtgctccatagtgtggccacctaaatcctcacat |
218 |
Q |
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| T |
39030864 |
acaggagaaggacttgaatggggcgtgcttttaagttttggacctggactcactgtcgagactgttgtgctccatagtgtggccacctaaatcctcacat |
39030963 |
T |
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| Q |
219 |
tttaccaaggcaacaagttctatttcacccaaaagtgaatgtgtcattcttcacatgtttcat |
281 |
Q |
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| T |
39030964 |
tttaccaaggcaacaagttctatttcacccaaaagtgaatgtgtcattcttcacatgtttcat |
39031026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 37862815 - 37862595
Alignment:
| Q |
23 |
catgtacttagtgagtatggtaacatgtcaagtccatccgtgttattcattttggatgagatgaggaggaagtcaaaagaagaaggacttggcacaacag |
122 |
Q |
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| T |
37862815 |
catgtacttagcgaatatggtaacatgtcaagtgcgtgtgtgctattcatcttggatgagatgaggatgaaatcaaaagaagacggacttgccacaaccg |
37862716 |
T |
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| Q |
123 |
gagaaggacttgaatggggcgtgcttttaagttttggacctggactcactgtcgagactgttgtgctccatagtgtggccacctaaatcctcacatttta |
222 |
Q |
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| T |
37862715 |
gcgagggactcgaatggggtgtgcttttcggttttggtcccggactcacaatcgagactgttgtgctccgtagtgtgtccacctaaatcctcacatctta |
37862616 |
T |
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| Q |
223 |
ccaaggcaacaagttctattt |
243 |
Q |
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| T |
37862615 |
ctaagtcaacaaattctattt |
37862595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 37858789 - 37858602
Alignment:
| Q |
23 |
catgtacttagtgagtatggtaacatgtcaagtccatccgtgttattcattttggatgagatgaggaggaagtcaaaagaagaaggacttggcacaacag |
122 |
Q |
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||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
37858789 |
catgtgcttagcgagtatggtaacatgtcaagtgcatgtgtgttattcatcttggatgagatgaggaggaagtcaaaagaagacggacttgccacaacag |
37858690 |
T |
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| Q |
123 |
gagaaggacttgaatggggcgtgcttttaagttttggacctggactcactgtcgagactgttgtgctccatagtgtggccacctaaat |
210 |
Q |
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| T |
37858689 |
gcgaggggctggaatggggtgtcctatttggtttcgggcccggactcactgttgagactgtagtgctccacagtgttgccacttaaat |
37858602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 24163209 - 24163151
Alignment:
| Q |
29 |
cttagtgagtatggtaacatgtcaagtccatccgtgttattcattttggatgagatgag |
87 |
Q |
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| T |
24163209 |
cttagtgaatatggtaacatgtcaagtgcatgtgtattattcatcttagatgagatgag |
24163151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 1478699 - 1478760
Alignment:
| Q |
26 |
gtacttagtgagtatggtaacatgtcaagtccatccgtgttattcattttggatgagatgag |
87 |
Q |
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| T |
1478699 |
gtacttagtgaatatggtaacatgtcaagcgcatgtgtattgttcatcttggatgagatgag |
1478760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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