View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13771_low_67 (Length: 292)

Name: NF13771_low_67
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13771_low_67
NF13771_low_67
[»] chr7 (4 HSPs)
chr7 (132-213)||(13937597-13937677)
chr7 (132-213)||(39286628-39286708)
chr7 (132-217)||(9987422-9987506)
chr7 (140-213)||(17218402-17218475)
[»] chr3 (2 HSPs)
chr3 (132-213)||(15259784-15259864)
chr3 (150-217)||(33590859-33590925)
[»] chr2 (1 HSPs)
chr2 (132-217)||(31140328-31140412)
[»] chr4 (4 HSPs)
chr4 (85-147)||(18747729-18747791)
chr4 (15-88)||(18747815-18747886)
chr4 (16-88)||(52367702-52367774)
chr4 (171-213)||(30231040-30231082)
[»] scaffold0094 (1 HSPs)
scaffold0094 (140-217)||(6814-6890)
[»] chr8 (3 HSPs)
chr8 (16-88)||(24252754-24252826)
chr8 (132-211)||(14330807-14330885)
chr8 (172-216)||(24251537-24251581)
[»] chr1 (2 HSPs)
chr1 (16-88)||(23247918-23247990)
chr1 (171-217)||(23246701-23246747)
[»] chr5 (2 HSPs)
chr5 (132-217)||(21724279-21724363)
chr5 (132-217)||(21804015-21804099)


Alignment Details
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 13937597 - 13937677
Alignment:
Q  132 tttcaagctattactatccactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtac 213  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13937597 tttcaaggtattactatccactctctctattataat-gtgtgttctcttcaacaaatcaaccatgttcccataaacttgtac 13937677  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 39286628 - 39286708
Alignment:
Q  132 tttcaagctattactatccactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtac 213  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39286628 tttcaaggtattactattcactctctctattataat-gtgtgttctcttcaacaaatcaaccatgttcccataaacttgtac 39286708  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 9987422 - 9987506
Alignment:
Q  132 tttcaagctattactatccactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctga 217  Q
    ||||||| |||||| || ||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |||||    
T  9987422 tttcaaggtattaccattcactctctctattataata-tatgttcttttcaacaaatcaaccatgttcccataaacttgtgcctga 9987506  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 17218475 - 17218402
Alignment:
Q  140 tattactatccactctctctatta-taatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtac 213  Q
    |||||| || |||||||||||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  17218475 tattaccattcactctctctattaataata-tgtgttatcttcaaaaaatcaaccatgttcccataaacttgtac 17218402  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 15259864 - 15259784
Alignment:
Q  132 tttcaagctattactatccactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtac 213  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15259864 tttcaaggtattactattcactctctctattataat-gtgtgttctcttcaacaaatcaaccatgttcccataaacttgtac 15259784  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 33590859 - 33590925
Alignment:
Q  150 cactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctga 217  Q
    |||||||||||||| |||| ||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  33590859 cactctctctattacaata-tgtattctcttcaacaaatcaaccatgtttccataaacttgtacctga 33590925  T

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Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 31140328 - 31140412
Alignment:
Q  132 tttcaagctattactatccactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctga 217  Q
    ||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||    
T  31140328 tttcaaggtattactacccactctctctattataatgg-gtgttctcttcaacaaatcaaccatgttcccataaatttgtacctga 31140412  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 18747791 - 18747729
Alignment:
Q  85 aataattaataacaatttcatctatgatcactactaaaatacagtgatttcaagctattacta 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18747791 aataattaataacaatttcatctatgatcactactaaaatacagtgatttcaaggtattacta 18747729  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 18747886 - 18747815
Alignment:
Q  15 actctccaacaaagcttaaaaactctttgaagttctcttcagttggatgatagtgtccgctttatgcccaaata 88  Q
    ||||||||| ||||||||||||||||  |||||||| |||||||| |||||||||||| |||||||||||||||    
T  18747886 actctccaagaaagcttaaaaactct--gaagttctgttcagttgaatgatagtgtccactttatgcccaaata 18747815  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 52367702 - 52367774
Alignment:
Q  16 ctctccaacaaagcttaaaaactctttgaagttctcttcagttggatgatagtgtccgctttatgcccaaata 88  Q
    |||||||| |||||||| ||| ||||||||||||||||| |||||||| |||||||| || |||| |||||||    
T  52367702 ctctccaagaaagcttataaattctttgaagttctcttctgttggatggtagtgtccactgtatggccaaata 52367774  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 30231040 - 30231082
Alignment:
Q  171 gtgttctcttcaacaaatcaaccatgttcccataaacttgtac 213  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||    
T  30231040 gtgttttcttcaacaaatcaagcatgttaccataaacttgtac 30231082  T

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Target: scaffold0094 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 6814 - 6890
Alignment:
Q  140 tattactatccactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctga 217  Q
    |||||| || |||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  6814 tattaccattcactctctatattataata-tgtgttctcttcaataaatcaaccatgttcccataaacttgtacctga 6890  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 24252754 - 24252826
Alignment:
Q  16 ctctccaacaaagcttaaaaactctttgaagttctcttcagttggatgatagtgtccgctttatgcccaaata 88  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||| |||||||    
T  24252754 ctctccaagaaagcttaaaaactctttgaagttctcttcaattggatgatagtatccactttatggccaaata 24252826  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 14330807 - 14330885
Alignment:
Q  132 tttcaagctattactatccactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgt 211  Q
    ||||||| |||||| || |||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||||    
T  14330807 tttcaaggtattaccattcactctctatattataata-tgtgttcttgtcaacaaatcaaccatgttcccataaacttgt 14330885  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 24251537 - 24251581
Alignment:
Q  172 tgttctcttcaacaaatcaaccatgttcccataaacttgtacctg 216  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||    
T  24251537 tgttttcttcaacaaatcaagcatgttaccataaacttgtacctg 24251581  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 23247918 - 23247990
Alignment:
Q  16 ctctccaacaaagcttaaaaactctttgaagttctcttcagttggatgatagtgtccgctttatgcccaaata 88  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |||||||    
T  23247918 ctctccaagaaagcttaaaaactctttgaagttctcttaagttggatgatagtatccactttatggccaaata 23247990  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 23246701 - 23246747
Alignment:
Q  171 gtgttctcttcaacaaatcaaccatgttcccataaacttgtacctga 217  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||||    
T  23246701 gtgttttcttcaacaaatcaagcatgttaccataaacttgtacctga 23246747  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 21724279 - 21724363
Alignment:
Q  132 tttcaagctattactatccactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctga 217  Q
    ||||||| |||||| || |||||||| |||||||||| ||||||||  |||||||||||||||||| ||||||||||||| |||||    
T  21724279 tttcaaggtattaccattcactctctatattataata-tgtgttcttgtcaacaaatcaaccatgtacccataaacttgtgcctga 21724363  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 21804015 - 21804099
Alignment:
Q  132 tttcaagctattactatccactctctctattataatagtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctga 217  Q
    ||||||| |||||| || |||||||| |||||||||| ||||||||  |||||||||||||||||| ||||||||||||| |||||    
T  21804015 tttcaaggtattaccattcactctctatattataata-tgtgttcttgtcaacaaatcaaccatgtacccataaacttgtgcctga 21804099  T

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