View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_68 (Length: 286)
Name: NF13771_low_68
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 28153413 - 28153154
Alignment:
| Q |
19 |
ctattcacactttgaatttgtttgattttctgtatgtaatttgatggagatgataaaccatctctactatcctcaattgtgttaaactcattaataaata |
118 |
Q |
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| T |
28153413 |
ctattcacactttgaatttgtttgattttctggatgtaatttgatggagatgataaaccatctctactatcctcaattgtgttaaactcattaataaata |
28153314 |
T |
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| Q |
119 |
aggtggtttgtggatcaatattatgaacctggttaaatgctttggctgaaaaatcttgtccaagtttaccttcaaagaatgagaaatggagattttcatt |
218 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28153313 |
aggtcgtttgtggatcaatattatgaaccttgttaaatgctttggctgaaaaatcttgtccaagtttaccttcaaagaatgagaaatggagattttcatt |
28153214 |
T |
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| Q |
219 |
aacaacatcccaaccaataacttggcctttgtatcttcccacaacggaattcattctttt |
278 |
Q |
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| T |
28153213 |
aacaacatcccaaccaataacttggcccttgtatcttcccacaacggaattcattctttt |
28153154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 8023267 - 8023520
Alignment:
| Q |
18 |
actattcacactttgaatttgtttgattttctgtatgtaatttgatggagatgataaaccatctctactatcctcaattgtgttaaactcattaataaat |
117 |
Q |
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|||||||||||||||||| | |||||| |||| || || ||| || | |||||||||||||| |||||||||||| || ||| | ||||| || || |
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| T |
8023267 |
actattcacactttgaatctctttgatcttctcgatatacgttggcggggttgataaaccatctcgactatcctcaatggtattatattcattcatgaac |
8023366 |
T |
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| Q |
118 |
aaggtggtttgtggatcaatattatgaacctggttaaatgctttggctgaaaaatcttgtccaagtttaccttcaaagaatgagaaatggagattttcat |
217 |
Q |
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| T |
8023367 |
aaagtagtttgcccgtcaatgttgtgaacctcattaaacatcctagctgaaaagttttgtcccaatttactttcgaagaatgagaaatgtaggttttcat |
8023466 |
T |
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| Q |
218 |
taacaacatcccaaccaataacttggcctttgtatcttcccacaacggaattca |
271 |
Q |
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||||||||||||||||||||| || || ||||||||| ||||| |||||||| |
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| T |
8023467 |
taacaacatcccaaccaataagctgacccttgtatcttgacacaatggaattca |
8023520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 21543713 - 21543814
Alignment:
| Q |
168 |
aaaatcttgtccaagtttaccttcaaagaatgagaaatggagattttcattaacaacatcccaaccaataacttggcctttgtatcttcccacaacggaa |
267 |
Q |
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||||| |||||| ||||||| ||||||||||||| |||| ||||||||||||| ||||||||||||||| | ||| | ||||||||| |||||| ||| |
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| T |
21543713 |
aaaattttgtcctagtttactttcaaagaatgaggaatgcagattttcattaataacatcccaaccaattagctggtccttgtatcttgacacaacagaa |
21543812 |
T |
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| Q |
268 |
tt |
269 |
Q |
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|| |
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| T |
21543813 |
tt |
21543814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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