View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_69 (Length: 285)
Name: NF13771_low_69
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 6809397 - 6809653
Alignment:
| Q |
12 |
gattatactcctcctatttaacaaactgtatacatgaggttgcctattttctatggccaaaagaacaacatttttgttctgactgtccacatcttgaata |
111 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6809397 |
gattatactcctcttatttaacaaactgtatacatgaggttgcctattttctatggccaaaagaacaacatttttgttctgactgtccacatcttgaata |
6809496 |
T |
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| Q |
112 |
gccacagggtacacatctagaatcttttcaatcatttcagtcactcccatctttgctgcaattaaaataggtgacactgttctccttttctcaatagcct |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||| ||||||||| |
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| T |
6809497 |
gccacagggtacacatctagaatcttttcaatcatttcagtcactcccatctttgctgcgattaaaattggtgacattgttctccttttcgcaatagcct |
6809596 |
T |
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| Q |
212 |
cattttctgtatagctctttattttacccatgttatcaccaccatgatcttcaacat |
268 |
Q |
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|||||||||||| ||||||||||||||| |||| ||||||||||| |||||||||| |
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| T |
6809597 |
cattttctgtattgctctttattttacctatgtcatcaccaccattctcttcaacat |
6809653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 6817526 - 6817784
Alignment:
| Q |
12 |
gattatactcctcctatttaacaaactgtatacatgaggttgcctattttctatggccaaaagaacaacatttttgttctgactgtccacatcttgaata |
111 |
Q |
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|||||| |||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6817526 |
gattattctcctctcatttaacaaactatatacatgaggttgcctattctctatggccaaaagaacaacatttttgttctgactgaccacatcttgaata |
6817625 |
T |
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| Q |
112 |
gccacagggtacacatctagaatcttttcaatcatttcagtcactcccatctttgctgcaattaaaataggtgacactgttctccttttctcaatagcct |
211 |
Q |
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| T |
6817626 |
gccacagggtacacatctagaatcttttcaatcatttcagtcactcccatctttgctgcgattaaaattggtgacactgttctccttttcgcaatagcct |
6817725 |
T |
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| Q |
212 |
cattttctgtatagctctttattttacccatgttatcaccaccatgatcttcaacatga |
270 |
Q |
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| T |
6817726 |
cattttctgtattgctctttattttatccatgttatcaccaccatgatcttcaacatga |
6817784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 6832040 - 6832295
Alignment:
| Q |
12 |
gattatactcctcctatttaacaaactgtatacatgaggttgcctattttctatggccaaaagaacaacatttttgttctgactgtccacatcttgaata |
111 |
Q |
| |
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||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
6832040 |
gattacactcctcttatttaacaaactgtatacatgaggttgcctattctctatggccaaaagaacaacattcttgttctgactgtccacatcgtgaata |
6832139 |
T |
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| Q |
112 |
gccacagggtacacatctagaatcttttcaatcatttcagtcactcccatctttgctgcaattaaaataggtgacactgttctccttttctcaatagcct |
211 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | | |
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| T |
6832140 |
gccacagggtacatgtctagaatattttcaatcatttcagtcactcccatctttgctgcaattaaaattggtgacaccattctccttttctcaataactt |
6832239 |
T |
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| Q |
212 |
cattttctgtatagctctttattttacccatgttatcaccaccatgatcttcaaca |
267 |
Q |
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|||||||||||| ||||||||||||| | |||| | |||||||| | ||||||||| |
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| T |
6832240 |
cattttctgtattgctctttattttatctatgtcaccaccaccaagttcttcaaca |
6832295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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