View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13771_low_75 (Length: 269)

Name: NF13771_low_75
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13771_low_75
NF13771_low_75
[»] chr5 (10 HSPs)
chr5 (18-253)||(39168955-39169193)
chr5 (110-252)||(40418387-40418529)
chr5 (110-234)||(3299640-3299767)
chr5 (110-234)||(3392533-3392660)
chr5 (113-234)||(38987827-38987948)
chr5 (113-234)||(39726546-39726667)
chr5 (110-234)||(39879942-39880066)
chr5 (113-220)||(1163564-1163674)
chr5 (113-220)||(1850065-1850175)
chr5 (62-164)||(39400042-39400144)
[»] chr4 (2 HSPs)
chr4 (113-234)||(25912130-25912251)
chr4 (97-239)||(44444596-44444735)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 39169193 - 39168955
Alignment:
Q  18 gagggtcttgtaaagtgttctctgatggcctcaccagatgaggggtggtaggtttgattccggtacattgctgctactctgaaggtgagacgagtgtctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39169193 gagggtcttgtaaagtgttctctgatggcctcaccagatgaggggtggtaggtttgattccggtacattgctgctactctgaaggtgagacgagtgtctt 39169094  T
Q  118 gttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaaca---acaattctaccattttcttcatcataactactcttggtaat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  39169093 gttgtagatcttttaaaaagagttgataatcagattcccacttaccctcaacaacaacaacaattctaccattttcttcatcataactactcttggtaat 39168994  T
Q  215 caaaattgcagcaggaaggtcgccattgatattggtgtt 253  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39168993 caaaattgcagcaggaaggtcgccattgatattggtgtt 39168955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 252
Target Start/End: Complemental strand, 40418529 - 40418387
Alignment:
Q  110 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttg 209  Q
    |||||||||||||||||| || || ||||||||||||||||||||||||||||| | || | |||||| ||||||||| |||||  |||||||| |||||    
T  40418529 agtgtcttgttgtagatcattgaagaagagttgataatcagattcccacttatcatgaagagcaacaactctaccattctcttcggcataactaatcttg 40418430  T
Q  210 gtaatcaaaattgcagcaggaaggtcgccattgatattggtgt 252  Q
    || |||||||| ||||||||||||| |  |||||| |||||||    
T  40418429 gtgatcaaaatggcagcaggaaggttgatattgatgttggtgt 40418387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 3299767 - 3299640
Alignment:
Q  110 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccatt---ttcttcatcataactactc 206  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |||||||||    |||||  |||||||| |     
T  3299767 agtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaatt 3299668  T
Q  207 ttggtaatcaaaattgcagcaggaaggt 234  Q
    ||||| |||||||| |||||||||||||    
T  3299667 ttggtgatcaaaatggcagcaggaaggt 3299640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 3392660 - 3392533
Alignment:
Q  110 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccatt---ttcttcatcataactactc 206  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |||||||||    |||||  |||||||| |     
T  3392660 agtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaatt 3392561  T
Q  207 ttggtaatcaaaattgcagcaggaaggt 234  Q
    ||||| |||||||| |||||||||||||    
T  3392560 ttggtgatcaaaatggcagcaggaaggt 3392533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 38987948 - 38987827
Alignment:
Q  113 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttggta 212  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||| |||||||||  ||||  |||||||| ||||| |     
T  38987948 gtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttgctg 38987849  T
Q  213 atcaaaattgcagcaggaaggt 234  Q
    |||||||| |||||||||||||    
T  38987848 atcaaaatggcagcaggaaggt 38987827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 39726667 - 39726546
Alignment:
Q  113 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttggta 212  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||| |||||||||  ||||  |||||||| ||||| |     
T  39726667 gtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttgctg 39726568  T
Q  213 atcaaaattgcagcaggaaggt 234  Q
    |||||||| |||||||||||||    
T  39726567 atcaaaatggcagcaggaaggt 39726546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 39880066 - 39879942
Alignment:
Q  110 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttg 209  Q
    ||||| |||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||| |||||||||  ||||  |||||||| |||||    
T  39880066 agtgttttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttg 39879967  T
Q  210 gtaatcaaaattgcagcaggaaggt 234  Q
     | |||||||| |||||||||||||    
T  39879966 ctgatcaaaatggcagcaggaaggt 39879942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 1163564 - 1163674
Alignment:
Q  113 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccatt---ttcttcatcataactactcttg 209  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||  ||||| |||||||||    |||| | || ||||| |||||    
T  1163564 gtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaatcttg 1163663  T
Q  210 gtaatcaaaat 220  Q
    |||||||||||    
T  1163664 gtaatcaaaat 1163674  T

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Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 1850175 - 1850065
Alignment:
Q  113 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccatt---ttcttcatcataactactcttg 209  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||  || || |||||||||    |||| | || ||||| |||||    
T  1850175 gtcttgttgtaaatcttttaagaagagttgataatcagattcccacttatcctgaacaggaataactctaccattctcctctttagcaaaactaatcttg 1850076  T
Q  210 gtaatcaaaat 220  Q
    |||||||||||    
T  1850075 gtaatcaaaat 1850065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 39400144 - 39400042
Alignment:
Q  62 gtggtaggtttgattccggtacattgctgctactctgaaggtgagacgagtgtcttgttgtagatcttttaaaaagagttgataatcagattcccactta 161  Q
    ||||| || |||||| ||||||||||||||| |  ||||||||||| ||| | |||||  |||||||| ||| ||||||||||||||||||| |||||||    
T  39400144 gtggttgggttgatttcggtacattgctgctgcgttgaaggtgagatgagggccttgtcttagatcttctaagaagagttgataatcagattgccactta 39400045  T
Q  162 tcc 164  Q
    |||    
T  39400044 tcc 39400042  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 25912130 - 25912251
Alignment:
Q  113 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatcataactactcttggta 212  Q
    |||||| |||||||  ||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||  |||||||| |||||||     
T  25912130 gtcttgctgtagataatttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcttcggcataactaatcttggtg 25912229  T
Q  213 atcaaaattgcagcaggaaggt 234  Q
    |||||||| |||||| ||||||    
T  25912230 atcaaaatggcagcatgaaggt 25912251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 239
Target Start/End: Original strand, 44444596 - 44444735
Alignment:
Q  97 tgaaggtgagacgagtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccattttcttcatc 196  Q
    ||||||||||| ||| | |||||| ||||| |||||| || |||| ||||||||||||| | ||||||| ||||||||| ||     |||| ||||||||    
T  44444596 tgaaggtgagatgagcggcttgttttagatattttaagaaaagtttataatcagattccaatttatcctgaacaacaactatgt---cattctcttcatc 44444692  T
Q  197 ataactactcttggtaatcaaaattgcagcaggaaggtcgcca 239  Q
     |||||| | ||||||||||||||||||||| |||||||||||    
T  44444693 gtaactagtattggtaatcaaaattgcagcacgaaggtcgcca 44444735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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