View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13771_low_76 (Length: 267)

Name: NF13771_low_76
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13771_low_76
NF13771_low_76
[»] chr8 (5 HSPs)
chr8 (1-258)||(33048913-33049170)
chr8 (209-253)||(34201061-34201105)
chr8 (211-248)||(10441208-10441245)
chr8 (206-242)||(1586619-1586655)
chr8 (207-243)||(4298899-4298935)
[»] chr3 (6 HSPs)
chr3 (210-253)||(41319326-41319369)
chr3 (206-243)||(28576726-28576763)
chr3 (211-243)||(12704674-12704706)
chr3 (207-243)||(20503475-20503511)
chr3 (211-243)||(21110480-21110512)
chr3 (211-243)||(32166200-32166232)
[»] chr1 (6 HSPs)
chr1 (211-242)||(24701117-24701148)
chr1 (211-259)||(17080898-17080946)
chr1 (211-243)||(29230075-29230107)
chr1 (211-243)||(30847737-30847769)
chr1 (207-243)||(32461476-32461512)
chr1 (207-243)||(38078674-38078710)
[»] chr6 (7 HSPs)
chr6 (211-253)||(9024193-9024235)
chr6 (207-243)||(426527-426563)
chr6 (211-243)||(2493431-2493463)
chr6 (207-243)||(4118346-4118382)
chr6 (211-243)||(8148130-8148162)
chr6 (207-243)||(28715305-28715341)
chr6 (211-243)||(33076418-33076450)
[»] chr5 (8 HSPs)
chr5 (209-243)||(38749578-38749612)
chr5 (212-254)||(39750827-39750869)
chr5 (220-253)||(4344871-4344904)
chr5 (207-243)||(8420037-8420073)
chr5 (211-243)||(16881146-16881178)
chr5 (207-243)||(24906314-24906350)
chr5 (206-242)||(27253296-27253332)
chr5 (207-243)||(31084333-31084369)
[»] chr7 (2 HSPs)
chr7 (211-248)||(7241011-7241048)
chr7 (207-243)||(7438716-7438752)
[»] chr4 (9 HSPs)
chr4 (206-243)||(8457935-8457972)
chr4 (206-243)||(14465087-14465124)
chr4 (209-246)||(26276024-26276061)
chr4 (206-243)||(43093537-43093574)
chr4 (211-243)||(2976704-2976736)
chr4 (207-243)||(21945513-21945549)
chr4 (211-243)||(27096018-27096050)
chr4 (207-243)||(37203274-37203310)
chr4 (207-243)||(51701268-51701304)
[»] chr2 (1 HSPs)
chr2 (207-243)||(30335427-30335463)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 33048913 - 33049170
Alignment:
Q  1 cagttattttaaatataaacacagttacaaagcggtcatgttgctatatgatgaatgaatcttcattaaacttttcaagtttttatataatattaatact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33048913 cagttattttaaatataaacacagttacaaagcggtcatgttgctatatgatgagtgaatcttcattaaacttttcaagtttttatataatattaatact 33049012  T
Q  101 accatctttatctatcaaaacatacgtagcactgacacttctaattctaagttctaatcgaactggtgttcagtgtccaacacatgtgatatcaacatat 200  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||    
T  33049013 accatctttatctatcaaaacatacttagcactgacacttctaattctaagttctaatagaactcgtgttcagtgtccaacacatgtgacatcaacatat 33049112  T
Q  201 gtattatgtaattacattcaattatgtcattttttcaaattatcattagtgtctgtgt 258  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  33049113 gtattatgtaattacattcaattatgtcattttttcaagttatcattagtgtcagtgt 33049170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 34201061 - 34201105
Alignment:
Q  209 taattacattcaattatgtcattttttcaaattatcattagtgtc 253  Q
    |||||||||| |||||||||||||| ||||||||| |||||||||    
T  34201061 taattacattgaattatgtcattttctcaaattattattagtgtc 34201105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 10441245 - 10441208
Alignment:
Q  211 attacattcaattatgtcattttttcaaattatcatta 248  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  10441245 attacattgaattatgtcattttctcaaattatcatta 10441208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 1586655 - 1586619
Alignment:
Q  206 atgtaattacattcaattatgtcattttttcaaatta 242  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  1586655 atgtgattacgttcaattatgtcattttttcaaatta 1586619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 4298899 - 4298935
Alignment:
Q  207 tgtaattacattcaattatgtcattttttcaaattat 243  Q
    |||||||||||| |||||||| |||||||||||||||    
T  4298899 tgtaattacattaaattatgtgattttttcaaattat 4298935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 41319326 - 41319369
Alignment:
Q  210 aattacattcaattatgtcattttttcaaattatcattagtgtc 253  Q
    ||||||||| |||||||||||||||||||||||| ||| |||||    
T  41319326 aattacattgaattatgtcattttttcaaattattattggtgtc 41319369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 28576763 - 28576726
Alignment:
Q  206 atgtaattacattcaattatgtcattttttcaaattat 243  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  28576763 atgtaattacattcaattttgtcattttctcaaattat 28576726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 12704674 - 12704706
Alignment:
Q  211 attacattcaattatgtcattttttcaaattat 243  Q
    |||||||| ||||||||||||||||||||||||    
T  12704674 attacattgaattatgtcattttttcaaattat 12704706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 20503511 - 20503475
Alignment:
Q  207 tgtaattacattcaattatgtcattttttcaaattat 243  Q
    |||||||||| | ||||||||||||||||||||||||    
T  20503511 tgtaattacactgaattatgtcattttttcaaattat 20503475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 21110480 - 21110512
Alignment:
Q  211 attacattcaattatgtcattttttcaaattat 243  Q
    ||||||||||||||||||||||| |||||||||    
T  21110480 attacattcaattatgtcattttctcaaattat 21110512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 32166200 - 32166232
Alignment:
Q  211 attacattcaattatgtcattttttcaaattat 243  Q
    ||||||||||||||||||||||| |||||||||    
T  32166200 attacattcaattatgtcattttctcaaattat 32166232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 242
Target Start/End: Original strand, 24701117 - 24701148
Alignment:
Q  211 attacattcaattatgtcattttttcaaatta 242  Q
    ||||||||||||||||||||||||||||||||    
T  24701117 attacattcaattatgtcattttttcaaatta 24701148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 17080898 - 17080946
Alignment:
Q  211 attacattcaattatgtcattttttcaaattatcattagtgtctgtgtt 259  Q
    ||||||||||||||||| ||||| ||||||||| ||| ||||| |||||    
T  17080898 attacattcaattatgttattttctcaaattattattggtgtcggtgtt 17080946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 29230107 - 29230075
Alignment:
Q  211 attacattcaattatgtcattttttcaaattat 243  Q
    ||||||||||||||||||||||| |||||||||    
T  29230107 attacattcaattatgtcattttctcaaattat 29230075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 30847737 - 30847769
Alignment:
Q  211 attacattcaattatgtcattttttcaaattat 243  Q
    |||||||| ||||||||||||||||||||||||    
T  30847737 attacattgaattatgtcattttttcaaattat 30847769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 32461476 - 32461512
Alignment:
Q  207 tgtaattacattcaattatgtcattttttcaaattat 243  Q
    |||||||||||| |||||||| |||||||||||||||    
T  32461476 tgtaattacattaaattatgtgattttttcaaattat 32461512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 38078674 - 38078710
Alignment:
Q  207 tgtaattacattcaattatgtcattttttcaaattat 243  Q
    |||||||||||| |||||||| |||||||||||||||    
T  38078674 tgtaattacattgaattatgtgattttttcaaattat 38078710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 9024193 - 9024235
Alignment:
Q  211 attacattcaattatgtcattttttcaaattatcattagtgtc 253  Q
    |||||||| |||||||||||||| ||||||||||||| |||||    
T  9024193 attacattgaattatgtcattttctcaaattatcatttgtgtc 9024235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 426527 - 426563
Alignment:
Q  207 tgtaattacattcaattatgtcattttttcaaattat 243  Q
    |||||||||||| |||||||| |||||||||||||||    
T  426527 tgtaattacatttaattatgtgattttttcaaattat 426563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 2493431 - 2493463
Alignment:
Q  211 attacattcaattatgtcattttttcaaattat 243  Q
    ||||||||||||||||||||||| |||||||||    
T  2493431 attacattcaattatgtcattttgtcaaattat 2493463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 4118346 - 4118382
Alignment:
Q  207 tgtaattacattcaattatgtcattttttcaaattat 243  Q
    |||||||||||| |||||||| |||||||||||||||    
T  4118346 tgtaattacatttaattatgtgattttttcaaattat 4118382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 8148162 - 8148130
Alignment:
Q  211 attacattcaattatgtcattttttcaaattat 243  Q
    ||||||||||||||||||||||| |||||||||    
T  8148162 attacattcaattatgtcattttctcaaattat 8148130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 28715341 - 28715305
Alignment:
Q  207 tgtaattacattcaattatgtcattttttcaaattat 243  Q
    |||||||||| | ||||||||||||||||||||||||    
T  28715341 tgtaattacactgaattatgtcattttttcaaattat 28715305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 33076450 - 33076418
Alignment:
Q  211 attacattcaattatgtcattttttcaaattat 243  Q
    ||||||||||||||||||||||| |||||||||    
T  33076450 attacattcaattatgtcattttctcaaattat 33076418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 38749578 - 38749612
Alignment:
Q  209 taattacattcaattatgtcattttttcaaattat 243  Q
    |||||||||| ||||||||||||||||||||||||    
T  38749578 taattacattgaattatgtcattttttcaaattat 38749612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 39750869 - 39750827
Alignment:
Q  212 ttacattcaattatgtcattttttcaaattatcattagtgtct 254  Q
    |||||||||||||  ||||| ||||||||||||||||||||||    
T  39750869 ttacattcaattacttcattatttcaaattatcattagtgtct 39750827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 4344904 - 4344871
Alignment:
Q  220 aattatgtcattttttcaaattatcattagtgtc 253  Q
    |||||||||||||||||||||||| |||||||||    
T  4344904 aattatgtcattttttcaaattattattagtgtc 4344871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 8420073 - 8420037
Alignment:
Q  207 tgtaattacattcaattatgtcattttttcaaattat 243  Q
    |||||||||||| |||||||| |||||||||||||||    
T  8420073 tgtaattacattgaattatgttattttttcaaattat 8420037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 16881178 - 16881146
Alignment:
Q  211 attacattcaattatgtcattttttcaaattat 243  Q
    |||||||| ||||||||||||||||||||||||    
T  16881178 attacattaaattatgtcattttttcaaattat 16881146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 24906314 - 24906350
Alignment:
Q  207 tgtaattacattcaattatgtcattttttcaaattat 243  Q
    |||||||||| | ||||||||||||||||||||||||    
T  24906314 tgtaattacactgaattatgtcattttttcaaattat 24906350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 27253332 - 27253296
Alignment:
Q  206 atgtaattacattcaattatgtcattttttcaaatta 242  Q
    |||| |||||||||||||||| |||||||||||||||    
T  27253332 atgtgattacattcaattatgacattttttcaaatta 27253296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 31084369 - 31084333
Alignment:
Q  207 tgtaattacattcaattatgtcattttttcaaattat 243  Q
    |||||||||||| |||||||| |||||||||||||||    
T  31084369 tgtaattacattgaattatgtgattttttcaaattat 31084333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 7241011 - 7241048
Alignment:
Q  211 attacattcaattatgtcattttttcaaattatcatta 248  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  7241011 attacattgaattatgtcattttttcaaatcatcatta 7241048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 7438752 - 7438716
Alignment:
Q  207 tgtaattacattcaattatgtcattttttcaaattat 243  Q
    |||||||||||| |||||||| |||||||||||||||    
T  7438752 tgtaattacattgaattatgtgattttttcaaattat 7438716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 8457972 - 8457935
Alignment:
Q  206 atgtaattacattcaattatgtcattttttcaaattat 243  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  8457972 atgtgattacattcaattatgtcattttctcaaattat 8457935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 14465087 - 14465124
Alignment:
Q  206 atgtaattacattcaattatgtcattttttcaaattat 243  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  14465087 atgtaattacattgaattatgtgattttttcaaattat 14465124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 26276024 - 26276061
Alignment:
Q  209 taattacattcaattatgtcattttttcaaattatcat 246  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  26276024 taattacattgaattatgtcattttctcaaattatcat 26276061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 43093537 - 43093574
Alignment:
Q  206 atgtaattacattcaattatgtcattttttcaaattat 243  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  43093537 atgtgattacattcaattatgccattttttcaaattat 43093574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 2976736 - 2976704
Alignment:
Q  211 attacattcaattatgtcattttttcaaattat 243  Q
    ||||||||||||||||||||||| |||||||||    
T  2976736 attacattcaattatgtcattttctcaaattat 2976704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 21945549 - 21945513
Alignment:
Q  207 tgtaattacattcaattatgtcattttttcaaattat 243  Q
    |||||||||| | ||||||||||||||||||||||||    
T  21945549 tgtaattacactgaattatgtcattttttcaaattat 21945513  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 27096018 - 27096050
Alignment:
Q  211 attacattcaattatgtcattttttcaaattat 243  Q
    ||||||||||||||||||||||| |||||||||    
T  27096018 attacattcaattatgtcattttgtcaaattat 27096050  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 37203310 - 37203274
Alignment:
Q  207 tgtaattacattcaattatgtcattttttcaaattat 243  Q
    |||||||||| | ||||||||||||||||||||||||    
T  37203310 tgtaattacactaaattatgtcattttttcaaattat 37203274  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 51701304 - 51701268
Alignment:
Q  207 tgtaattacattcaattatgtcattttttcaaattat 243  Q
    |||||||||| |||||||||| |||||||||||||||    
T  51701304 tgtaattacactcaattatgtaattttttcaaattat 51701268  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 30335463 - 30335427
Alignment:
Q  207 tgtaattacattcaattatgtcattttttcaaattat 243  Q
    |||||||||| | ||||||||||||||||||||||||    
T  30335463 tgtaattacactaaattatgtcattttttcaaattat 30335427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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