View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_8 (Length: 595)
Name: NF13771_low_8
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Original strand, 33401041 - 33401618
Alignment:
| Q |
1 |
aacgtcaacaaaaaatatcttcacccataaaagcaatgacagaaaaaccataatgtataaagatgatgaagaatgtatagtttttcctcaccttggcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33401041 |
aacgtcaacaaaaaatatcttcacccataaaagcaatgacagaaaaaccataatgtataaagatgatgaagaatgtatagtttttcctcaccttggcttc |
33401140 |
T |
|
| Q |
101 |
atcaaatacataagtaggaaaactagagagtacaccaaggaaagtccaccaatgagaatatatgcaatccccaagaaatcattttttccaccaatccatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33401141 |
atcaaatacataagtaggaaaactagagagtacaccaaggaaagtccaccaatgagaatatatgcaatccccaagaaatcattttttccaccaatccatg |
33401240 |
T |
|
| Q |
201 |
ttgtggttgatagaatcacactctttgttcctccaaattgatatgtattataattgttctctattactacagttatttcatcgttagcttcaaggtcgac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33401241 |
ttgtggttgatagaatcacactctttgttcctccaaattgatatgtattataattgttctctattactaccgttatttcatcgttagcttcaaggtcgac |
33401340 |
T |
|
| Q |
301 |
ttcaatcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgttcactcaactgtttcattccacatcaa |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33401341 |
ttcaatcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgttcactcaactgtttcattccacatcaa |
33401440 |
T |
|
| Q |
401 |
cacaaacaagattaattttctcaaaatgtcgacaagaaaattatatttaacacgnnnnnnnttatatagtgacgaagatatataaatatttacttacagg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
33401441 |
cacaaacaagattaattttctcaaaatgtcgacaagaaaattatatttaacacgaaaaaaattatatagtgacaaagatatataaatatttacttacagg |
33401540 |
T |
|
| Q |
501 |
tatgctctcattaagtctagccccccaaataaaaccgccagtctgaaaatttttaggataaacatcagacccaaattt |
578 |
Q |
| |
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||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33401541 |
tatgctctcattaagtctagcacccccaattaaactgccagtctgaaaatttttaggataaacatcagacccaaattt |
33401618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 278 - 384
Target Start/End: Complemental strand, 43601010 - 43600904
Alignment:
| Q |
278 |
tcatcgttagcttcaaggtcgacttcaatcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgttcac |
377 |
Q |
| |
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||||||||| ||||||| ||| || |||||||| || | ||||||||| || || | |||||||||||||||||| |||||||||||||||||||||| |
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| T |
43601010 |
tcatcgttaacttcaagatcggactctatcttcccatacagttttctgaacgttggtaatgctgctgttctcatccaaacaatcagatcctcttgttcac |
43600911 |
T |
|
| Q |
378 |
tcaactg |
384 |
Q |
| |
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||||||| |
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|
| T |
43600910 |
tcaactg |
43600904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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