View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_87 (Length: 247)
Name: NF13771_low_87
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_87 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 50184293 - 50184065
Alignment:
| Q |
1 |
cttaaggtcaacaagataagcacacaaatgtcttatctcctataaacaatgcaaatattgattaaacaaagcaacatcatttcattaatcaaatgaaagc |
100 |
Q |
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| T |
50184293 |
cttaaggtcaacaagataagcacacaaatgtcttatctcctataaacaatgcaaatattgattaaacaaagcaacatcatttcattaatcaaatgaaagc |
50184194 |
T |
|
| Q |
101 |
aaaaagggtagaatttttccataacattgtctaacacatggcataagaagacatgggtataaattgaatattgtaatcatacttacactttcaatacatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50184193 |
aaaaagggtagaatttttccataacattgtctaacacatggcataagaagacatgggtataaattgaatattgtaatcatatttacactttcaatacatg |
50184094 |
T |
|
| Q |
201 |
caaaactagttcaattctctagagtaggg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
50184093 |
caaaactagttcaattctctagagtaggg |
50184065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 16297200 - 16297416
Alignment:
| Q |
1 |
cttaaggtcaacaagataagcacacaaatgtcttatctcctataaacaatgcaaatattgattaaacaaagcaacatcatttcattaatcaaatgaaagc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||| |||||| ||||||||||||||| |
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| T |
16297200 |
cttaaggtcaacaagataagcacacaaatgtcttatctcctgtaaacaatgcagatatgaattaaacaaagcaa---catttctctaatcaaatgaaagc |
16297296 |
T |
|
| Q |
101 |
aaaaagggtagaa-tttttccataacattgtctaacacatggcataagaagacatgggtataaattgaatattgtaatcatacttacactttcaatacat |
199 |
Q |
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|||| |||||||| ||||||||||||| |||||||||||| |||||||| ||||| |||| ||||| ||||||||| ||| ||||||||||||||||| |
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| T |
16297297 |
aaaatgggtagaattttttccataacactgtctaacacattgcataagagaacatgtatatatattgattattgtaataatatttacactttcaatacat |
16297396 |
T |
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| Q |
200 |
gcaaaactagttcaattctc |
219 |
Q |
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||||||| |||| ||||||| |
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| T |
16297397 |
gcaaaaccagtttaattctc |
16297416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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