View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_9 (Length: 595)
Name: NF13771_low_9
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 18 - 588
Target Start/End: Original strand, 33152702 - 33153275
Alignment:
| Q |
18 |
gatacttgtaaatcaaacatcacattaaagggtggaggacaggtggagctgtttaattagagttgaaattctcttcctttcttacaataaatggtttaga |
117 |
Q |
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| T |
33152702 |
gatacttgtaaatcaaacatcacattaaagggtggaggacaggtggagctgtttaattagagttgaaattctcttccttttttacaataaatagtttaga |
33152801 |
T |
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| Q |
118 |
agcaatgtgaggtgggtctagaaataaacggagtttgacaataatttgattttgttctctatttgagattgaaaaatggctgaattctctcgaaccaatt |
217 |
Q |
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| T |
33152802 |
agcaatgtgaggtgggtctagaaataaacggagtttgacaataatttgattttgttctctatttgagattgaaaaatggttgaattttctcgaaccaatt |
33152901 |
T |
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| Q |
218 |
ggnnnnnnnaaccaaatgaatcaactgatttctcataatcaagtgtagaggtgggtattccatctcgttaaatattaggttaacctaaacatgtacatga |
317 |
Q |
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| T |
33152902 |
ggtttttttaatcaaatgaatcaactgatttctcataatcaagtgtagagttgggtattccatctcgttaaatattaggttaacctaaacatgtacatga |
33153001 |
T |
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| Q |
318 |
tgtcgagttgtgatatatgagt--acctcacattgattcactaatatacatgttcatttgtattgtgacaagtgtgagttatgtgcattgtttgaataag |
415 |
Q |
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| T |
33153002 |
tgtcgagttgtgatatatgagtaaacctcacattgattcattaatatacatgttcatttgtattgtgacaagtgtgagttatgtgcattgtttgaataag |
33153101 |
T |
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| Q |
416 |
tggatgttaaaattttataaataagat-gatccttaaacttaattccttaagattctttaaactcaattccttaagattttgtgttaagacgtgatgttc |
514 |
Q |
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| T |
33153102 |
ttgatgttaaaattttataaataagatagatccttaaacttaattccttaagattctttaaactcaattccttaagattttgtgttaagacgtgatgttc |
33153201 |
T |
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| Q |
515 |
agttctcttgtgtggttgctcttaacttaatatgaacgacattaagattttgtgttaagatgtgatattcttcg |
588 |
Q |
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| T |
33153202 |
agttctcttgtgtggtggctcttaactgaatatgaacgaccttaagattttgtgttaagatgtgatattgttcg |
33153275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 548
Target Start/End: Original strand, 33153241 - 33153308
Alignment:
| Q |
484 |
ccttaagattttgtgttaagacgtgat---gttcagttctcttgtgtggttgctcttaacttaatatg |
548 |
Q |
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| T |
33153241 |
ccttaagattttgtgttaagatgtgatattgttcggttctcttgtgtggttgctcttagctgaatatg |
33153308 |
T |
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