View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13771_low_91 (Length: 240)
Name: NF13771_low_91
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13771_low_91 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 25474154 - 25474330
Alignment:
| Q |
1 |
caaccactccctactctcgacagatacaatccccagggtcccaacatcattcataatacaagaaagctgtacttttttacccactcaaactccaccacca |
100 |
Q |
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| T |
25474154 |
caaccactccctactctcgacagatacaatcctcagggtcccaacatcattcataatacaagaaagctgtacttttttacccactcaaactccaccacca |
25474253 |
T |
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| Q |
101 |
agataaaactttaatttcctccaccatttcctccacttgtacaatcaaatttttgaaaattctctaattttggaact |
177 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
25474254 |
agataaaactttaatctcctccaccatttcctccacttttacaatcaaatttttgaaaattctctcattttggaact |
25474330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 25339361 - 25339572
Alignment:
| Q |
1 |
caaccactccctactctcgacagatacaatccccagggtcccaacatcattcataatacaagaaagctgtacttttttacccactcaaactccaccacca |
100 |
Q |
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|||| ||||||| |||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
25339361 |
caacgactccctgctctcgacggatacaatctccggggtcccaacaccattcataatacaagaaagctgtattcttttacccactcaaactccacca--- |
25339457 |
T |
|
| Q |
101 |
agataaaactttaatttcctccaccatttcctccacttgtacaatcaaatttttgaaaattctctaattttggaacttccaaatcacccaaattgtaaca |
200 |
Q |
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||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
25339458 |
agataaaactt-aatctcgtccaccatttcctccacttgtacaatcaaatttttgaaaattctttcattttggaacttccaaatcacccaaattgtaaca |
25339556 |
T |
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| Q |
201 |
ttccaaataagccaaa |
216 |
Q |
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|||||||||||||||| |
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| T |
25339557 |
ttccaaataagccaaa |
25339572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 25451560 - 25451680
Alignment:
| Q |
96 |
caccaagataaaactttaatttcctccaccatttcctccacttgtacaatcaaatttttgaaaattctctaattttggaacttccaaatcacccaaattg |
195 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||| || |||||||||||||||||| | |||| |||||||||||||| |||||| |
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| T |
25451560 |
caccaagataaaaccttaatctcctccaccatttcctccacttgtacactcgaatttttgaaaattctctcgtgttgggacttccaaatcacctaaattg |
25451659 |
T |
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| Q |
196 |
taacattccaaataagccaaa |
216 |
Q |
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|| |||||||||||| ||||| |
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| T |
25451660 |
tagcattccaaataatccaaa |
25451680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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