View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13771_low_94 (Length: 237)

Name: NF13771_low_94
Description: NF13771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13771_low_94
NF13771_low_94
[»] chr2 (3 HSPs)
chr2 (28-136)||(8716445-8716552)
chr2 (168-219)||(8716549-8716600)
chr2 (28-108)||(8723902-8723983)
[»] chr8 (2 HSPs)
chr8 (28-134)||(23443777-23443883)
chr8 (171-219)||(23443727-23443775)
[»] chr3 (6 HSPs)
chr3 (29-136)||(14333549-14333655)
chr3 (67-136)||(14329590-14329658)
chr3 (168-219)||(14323804-14323854)
chr3 (168-219)||(14329543-14329593)
chr3 (168-219)||(14333502-14333552)
chr3 (29-136)||(14323851-14323957)
[»] chr5 (1 HSPs)
chr5 (28-108)||(21236898-21236979)


Alignment Details
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 8716445 - 8716552
Alignment:
Q  28 gttaatctaacctgaaaattattgtgagtgaaaatccacgtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaaattaataatatgcacgagt 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  8716445 gttaatctaacctgaaaattattgtgagtgaaaatccacgtggtttcgaaaacaaaatgatgtgtttggtgtgcaatg-aaattaataatatgcacgagt 8716543  T
Q  128 tatcatcat 136  Q
    |||||||||    
T  8716544 tatcatcat 8716552  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 8716549 - 8716600
Alignment:
Q  168 tcatatatctatagttcattatttatataggatagtagatatcataagagat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8716549 tcatatatctatagttcattatttatataggatagtagatatcataagagat 8716600  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 8723902 - 8723983
Alignment:
Q  28 gttaatctaacctgaaaattattgtgagtgaa-aatccacgtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaa 108  Q
    ||||| |||||||  |||||||| |||||||| |||||||   |||||||| ||||||||||||||||| ||||||||||||    
T  8723902 gttaagctaacctagaaattattatgagtgaagaatccacacagtttcgaacacaaaatgatgtgtttgttgtgctatgaaa 8723983  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 23443883 - 23443777
Alignment:
Q  28 gttaatctaacctgaaaattattgtgagtgaaaa-tccacgtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaaattaataatatgcacgag 126  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| || |    
T  23443883 gttaatctaacctgaaaattattgcgagtgaaaaatccacgtggtttcgaaaacaaaatgatgtgtttgatgtgctatg-aaattaataatatgcgcggg 23443785  T
Q  127 ttatcatc 134  Q
    ||||||||    
T  23443784 ttatcatc 23443777  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 23443775 - 23443727
Alignment:
Q  171 tatatctatagttcattatttatataggatagtagatatcataagagat 219  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23443775 tatatctatagttcattatttatataggataatagatatcataagagat 23443727  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 14333655 - 14333549
Alignment:
Q  29 ttaatctaacctgaaaattattgtgagtgaaaatc-cacgtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaaattaataatatgcacgagt 127  Q
    |||||||||| ||||||||||| ||||||||||   || ||||||| ||||||||||||||||||||  ||| ||||| |||||||||||||| | || |    
T  14333655 ttaatctaac-tgaaaattattctgagtgaaaaaagcatgtggtttggaaaacaaaatgatgtgtttattgtactatg-aaattaataatatgaatgact 14333558  T
Q  128 tatcatcat 136  Q
    |||||||||    
T  14333557 tatcatcat 14333549  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 14329658 - 14329590
Alignment:
Q  67 gtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaaattaataatatgcacgagttatcatcat 136  Q
    ||||||| ||||||||||||||||||||  ||| ||||| |||||||||||||| | || ||||||||||    
T  14329658 gtggtttggaaaacaaaatgatgtgtttattgtactatg-aaattaataatatgaatgacttatcatcat 14329590  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 14323854 - 14323804
Alignment:
Q  168 tcatatatctatagttcattatttatataggatagtagatatcataagagat 219  Q
    ||||||| |||||||| ||| ||||||||||||| |||||||||||||||||    
T  14323854 tcatatagctatagtt-attgtttatataggataatagatatcataagagat 14323804  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 14329593 - 14329543
Alignment:
Q  168 tcatatatctatagttcattatttatataggatagtagatatcataagagat 219  Q
    ||||||| |||||||| ||| ||||||||||||| |||||||||||||||||    
T  14329593 tcatatagctatagtt-attgtttatataggataatagatatcataagagat 14329543  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 14333552 - 14333502
Alignment:
Q  168 tcatatatctatagttcattatttatataggatagtagatatcataagagat 219  Q
    ||||||| |||||||| ||| ||||||||||||| |||||||||||||||||    
T  14333552 tcatatagctatagtt-attgtttatataggataatagatatcataagagat 14333502  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 14323957 - 14323851
Alignment:
Q  29 ttaatctaacctgaaaattattgtgagtgaaaatc-cacgtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaaattaataatatgcacgagt 127  Q
    |||||||||| ||| ||||||| ||||||||||   || ||||||| ||||||||||||||||||||  ||| ||||  || ||||||||||| | || |    
T  14323957 ttaatctaac-tgagaattattctgagtgaaaaaagcatgtggtttggaaaacaaaatgatgtgtttattgtactat-taatttaataatatgaatgact 14323860  T
Q  128 tatcatcat 136  Q
    |||||||||    
T  14323859 tatcatcat 14323851  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 21236979 - 21236898
Alignment:
Q  28 gttaatctaacctgaaaattattgtgagtgaa-aatccacgtggtttcgaaaacaaaatgatgtgtttggtgtgctatgaaa 108  Q
    ||||| |||||||  |||||||| |||||||| |||||||   |||||||| ||||||||||||||||| | ||||||||||    
T  21236979 gttaagctaacctagaaattattatgagtgaagaatccacacagtttcgaacacaaaatgatgtgtttgttctgctatgaaa 21236898  T

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